frequencyPlot: Visualization of aCGH regions.

In tgac-vumc/CGHbase: CGHbase: Base functions and classes for arrayCGH data analysis.

Description

This function creates a frequency plot for aCGH regions.

Usage

	frequencyPlot(x, y, ...)

Arguments

x	An object of class cghRegions.
y	This argument is not used and should be missing.
...	Arguments plot.

Details

We find plotted on the x-axis the array probes sorted by chromosomal position. The vertical bars represent the frequency of gains and losses across your samples. The black bars represent gains, the gray bars represent losses.

Value

This function creates a plot.

Author(s)

Mark van de Wiel and Sjoerd Vosse

References

Mark A. van de Wiel and Wessel N. van Wieringen (2007). CGHregions: Dimension Reduction for Array CGH Data with Minimal Information Loss. Cancer Informatics, 2, 55-63.

Examples

	## Not run: 
		data(WiltingRegions)
		frequencyPlot(WiltingRegions)
	
## End(Not run)

tgac-vumc/CGHbase documentation built on May 31, 2019, 8:59 a.m.