INTERSECTset-class | R Documentation |
"INTERSECTset"
Container for storing standard intersect results created by the overLapper
function.
The setlist
slot stores the original label sets as vectors
in a list
;
intersectmatrix
organizes the label sets in a present-absent matrix; complexitylevels
represents the number of comparisons considered for each comparison set as vector of integers;
and intersectlist
contains the standard intersect vectors.
Objects can be created by calls of the form new("INTERSECTset", ...)
.
setlist
:Object of class "list"
: list
of vectors
intersectmatrix
:Object of class "matrix"
: binary matrix
complexitylevels
:Object of class "integer"
: vector
of integers
intersectlist
:Object of class "list"
: list
of vectors
signature(x = "INTERSECTset")
: coerces INTERSECTset
to list
signature(from = "list", to = "INTERSECTset")
: as(list, "INTERSECTset")
signature(x = "INTERSECTset")
: extracts data from complexitylevels
slot
signature(x = "INTERSECTset")
: extracts data from intersectlist
slot
signature(x = "INTERSECTset")
: extracts data from intersectmatrix
slot
signature(x = "INTERSECTset")
: returns number of original label sets
signature(x = "INTERSECTset")
: extracts slot names
signature(x = "INTERSECTset")
: extracts data from setlist
slot
signature(object = "INTERSECTset")
: summary view of INTERSECTset
objects
Thomas Girke
overLapper
, vennPlot
, olBarplot
, VENNset-class
showClass("INTERSECTset") ## Sample data setlist <- list(A=sample(letters, 18), B=sample(letters, 16), C=sample(letters, 20), D=sample(letters, 22), E=sample(letters, 18), F=sample(letters, 22)) ## Create VENNset interset <- overLapper(setlist[1:5], type="intersects") class(interset) ## Accessor methods for VENNset/INTERSECTset objects names(interset) setlist(interset) intersectmatrix(interset) complexitylevels(interset) intersectlist(interset) ## Coerce VENNset/INTERSECTset object to list as.list(interset)
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