returnRPKM: RPKM Normalization

View source: R/utilities.R

returnRPKMR Documentation

RPKM Normalization

Description

Converts read counts to RPKM normalized values.

Usage

returnRPKM(counts, ranges)

Arguments

counts

Count data frame, e.g. from an RNA-Seq experiment.

ranges

GRangesList object, e.g. generated by exonsBy(txdb, by="gene").

Value

data.frame

Author(s)

Thomas Girke

Examples

## Not run: 
countDFrpkm <- apply(countDF, 2, function(x) returnRPKM(counts=x, gffsub=eByg))

## End(Not run)

tgirke/systemPipeR documentation built on Sept. 24, 2024, 9:48 a.m.