returnRPKM: RPKM Normalization

Description Usage Arguments Value Author(s) Examples

View source: R/utilities.R

Description

Converts read counts to RPKM normalized values.

Usage

1
returnRPKM(counts, ranges)

Arguments

counts

Count data frame, e.g. from an RNA-Seq experiment.

ranges

GRangesList object, e.g. generated by exonsBy(txdb, by="gene").

Value

data.frame

Author(s)

Thomas Girke

Examples

1
2
3
4
## Not run: 
countDFrpkm <- apply(countDF, 2, function(x) returnRPKM(counts=x, gffsub=eByg))

## End(Not run)

tgirke/systemPipeR documentation built on July 20, 2021, 10:45 p.m.