tgrimes/scDynamic: Inferring dynamic networks from single-cell RNA-seq data

Methods for using diffusion maps to learn the manifold structure and imputing contaminated samples. Dynamic networks are inferred using the pseudo-time ordering given by the first dimension of the diffusion maps. Kernel-based and penalization methods are available for estimating networks at various time points.

Getting started

Package details

AuthorTyler Grimes [aut, cre], Somnath Datta [aut]
MaintainerTyler Grimes <[email protected]>
LicenseGPL-2 | GPL-3
Version0.0.1
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("tgrimes/scDynamic")
tgrimes/scDynamic documentation built on Nov. 5, 2019, 10:04 a.m.