get_diffusion: Obtain the Diffusion operator
In tgrimes/scDynamic: Inferring dynamic networks from single-cell RNA-seq data
Description
Usage
Arguments
Value
Description
Obtain the Diffusion operator
Usage
1
get_diffusion(counts, index = NULL, k1 = 10, k2 = 20)
Arguments
counts
An n by p matrix of counts with cells in rows and genes in columns.
index
(Optional:) an index vector for the rows of counts used to compute
local distance.
k1
Tuning parameter.
k2
Tuning parameter.
Value
A diffusion object.
tgrimes/scDynamic documentation built on Nov. 5, 2019, 10:04 a.m.
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Description Usage Arguments Value
Description
Obtain the Diffusion operator
Usage
1 | get_diffusion(counts, index = NULL, k1 = 10, k2 = 20)
|
Arguments
counts |
An n by p matrix of counts with cells in rows and genes in columns. |
index |
(Optional:) an index vector for the rows of counts used to compute local distance. |
k1 |
Tuning parameter. |
k2 |
Tuning parameter. |
Value
A diffusion object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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