read_hmmer: Read a HMMER .tbl/tsv file

In thackl/thacklr: A Collection of R Functions and Snippets I Often Use.

Read a HMMER .tbl/tsv file

Description

Read a HMMER tblout file from a protein search. The tbl file is converted to tab-separated file using 'hmmer-tbl2tsv'. Can also read tsv generated by 'hmmer-tbl2tsv' directly.

Usage

read_hmmer(file)

Arguments

file

Either a path to a file, a connection, or literal data (either a single string or a raw vector). Files ending in .gz, .bz2, .xz, or .zip will be automatically uncompressed. Files starting with ⁠http://⁠, ⁠https://⁠, ⁠ftp://⁠, or ⁠ftps://⁠ will be automatically downloaded. Remote gz files can also be automatically downloaded and decompressed. Literal data is most useful for examples and tests. To be recognised as literal data, the input must be either wrapped with I(), be a string containing at least one new line, or be a vector containing at least one string with a new line. Using a value of clipboard() will read from the system clipboard.

Value

tibble

thackl/thacklr documentation built on Oct. 16, 2023, 9:15 p.m.