activateAssay: Default assay name

In theMILOlab/SPATA2: A Toolbox for Spatial Expression Analysis

Default assay name

Description

Sets and extracts the active (default) assay name.

Usage

activateAssay(object, assay_name, verbose = NULL)

activeAssay(object)

Arguments

object	An object of class SPATA2 or, in case of S4 generics, objects of classes for which a method has been defined.
assay_name	Character value. The name of the assay to activate as the default assay
verbose	Logical. If TRUE, informative messages regarding the computational progress will be printed. (Warning messages will always be printed.)

Value

• activateAssay(): Updated SPATA2 object.

• activateAssay(): Character value. Name of the currently active assay.

See Also

getAssay(), getAssayNames()

Examples

data("example_data")

object <- example_data$object_UKF275T_diet

activeAssay(object)

theMILOlab/SPATA2 documentation built on Feb. 8, 2025, 11:41 p.m.