asSummarizedExperiment: Transform SPATA2 object to SummarizedExperiment object
In theMILOlab/SPATA2: A Toolbox for Spatial Expression Analysis
asSummarizedExperiment R Documentation
Transform SPATA2 object to SummarizedExperiment object
Description
Transforms an SPATA2 object to an object of class
SummarizedExperiment. See details for more information.
Usage
asSummarizedExperiment(object, ...)
Arguments
object
An object of class SPATA2 or, in case of S4 generics,
objects of classes for which a method has been defined.
...
Used to absorb deprecated arguments or functions.
Details
Output object contains the count matrix in slot @assays and
feature data.frame combined with barcode-spot coordinates
in slot @colData.
Slot @metadata is a list that contains the image object in slot $image.
Value
An object of class SummarizedExperiment.
theMILOlab/SPATA2 documentation built on Feb. 8, 2025, 11:41 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| asSummarizedExperiment | R Documentation |
Transform SPATA2 object to SummarizedExperiment object
Description
Transforms an SPATA2 object to an object of class
SummarizedExperiment. See details for more information.
Usage
asSummarizedExperiment(object, ...)
Arguments
object |
An object of class |
... |
Used to absorb deprecated arguments or functions. |
Details
Output object contains the count matrix in slot @assays and feature data.frame combined with barcode-spot coordinates in slot @colData.
Slot @metadata is a list that contains the image object in slot $image.
Value
An object of class SummarizedExperiment.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.