animateWellImage: Animate cellular movement

In theMILOlab/cypro: A Toolbox for Analysis of Single Cell Microscopy Data

Animate cellular movement

Description

This function animates the movement of cells that were covered within one well-image.

Usage

animateWellImage(
  object,
  well_plate,
  well,
  image,
  phase = "all",
  style = "normal",
  add_on_list = list(),
  ...
)

Arguments

object	A valid cypro object.
well_plate	Character value. The name of the well plate of interest. Valid inputs can be obtained via getWellPlateNames().
well	Character value. The well of interest (e.g. 'A1', 'B12')
image	Numeric value. The well-image of interest.
phase	Character or numeric. If character, the ordinal value referring to the phase of interest (e.g. 'first', 'second' etc.). referring to the phase of interest or 'all'. If numeric, the number referring to the phase. If set to NULL takes the phase denoted as default with adjustDefault(). Ignored if the experiment design contains only one phase.
style	Character value. If set to 'cell_tracker' imitates the tracking process of the CellTracker software.
add_on_list	A list of ggplot2-add-ons that are supposed to be integrated in the visualization process.
...	Additional arguments given to gganimate::animate().

Value

An animated GIF.

theMILOlab/cypro documentation built on April 5, 2022, 2:03 a.m.