DPT-methods: DPT methods

In theislab/destiny: Creates diffusion maps

DPT methods

Description

Methods for the DPT class. branch_divide subdivides branches for plotting (see the examples).

Usage

branch_divide(dpt, divide = integer(0L))

tips(dpt)

## S4 method for signature 'DPT'
dataset(object)

## S4 replacement method for signature 'DPT'
dataset(object) <- value

Arguments

dpt, object	DPT object
divide	Vector of branch numbers to use for division
value	Value of slot to set

Value

branch_divide and dataset<- return the changed object, dataset the extracted data, and tips the tip indices.

See Also

plot.DPT uses branch_divide for its divide argument.

Examples

data(guo_norm)
dpt <- DPT(DiffusionMap(guo_norm))
dpt_9_branches <- branch_divide(dpt, 1:3)
plot(dpt_9_branches, col_by = 'branch')

theislab/destiny documentation built on Nov. 19, 2024, 5:43 a.m.