modify_cds: modify_cds
In theron-palmer/splicemute: splicemute
Description
Usage
Arguments
Value
View source: R/functions.R
View source: R/.ipynb_checkpoints/functions-checkpoint.R
Description
modify_cds
Usage
1
modify_cds(combo_cds, target_junc, junc, start_exon, end_exon)
Arguments
combo_cds
the combined cds output from create_cds()
target_junc
the intron coordinates used for modifying the cds
junc
the junction location information output from is_UTR
start_exon
start exon (relative to junction) coordinates as character in form start-end
end_exon
end exon (relative to junction) coordinates as character in form start-end
Value
a list containing the modified cds and the junction location in the cds cds_mod junc_loc
theron-palmer/splicemute documentation built on Jan. 8, 2022, 10:36 a.m.
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Description Usage Arguments Value
View source: R/functions.R View source: R/.ipynb_checkpoints/functions-checkpoint.R
Description
modify_cds
Usage
1 | modify_cds(combo_cds, target_junc, junc, start_exon, end_exon)
|
Arguments
combo_cds |
the combined cds output from create_cds() |
target_junc |
the intron coordinates used for modifying the cds |
junc |
the junction location information output from is_UTR |
start_exon |
start exon (relative to junction) coordinates as character in form start-end |
end_exon |
end exon (relative to junction) coordinates as character in form start-end |
Value
a list containing the modified cds and the junction location in the cds cds_mod junc_loc
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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