getGeneSummary: extract gene summary from MAF or GISTIC object
In thesushantpatil/maftools: Summarize, Analyze and Visualize MAF Files
Description
Usage
Arguments
Value
Examples
Description
extract gene summary from MAF or GISTIC object
Usage
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getGeneSummary(x)
## S4 method for signature 'MAF'
getGeneSummary(x)
## S4 method for signature 'GISTIC'
getGeneSummary(x)
Arguments
x
An object of class MAF or GISTIC
Value
gene summary table
Examples
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laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
laml <- read.maf(maf = laml.maf)
getGeneSummary(laml)
thesushantpatil/maftools documentation built on May 18, 2020, 9:54 p.m.
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Description Usage Arguments Value Examples
Description
extract gene summary from MAF or GISTIC object
Usage
1 2 3 4 5 6 7 | getGeneSummary(x)
## S4 method for signature 'MAF'
getGeneSummary(x)
## S4 method for signature 'GISTIC'
getGeneSummary(x)
|
Arguments
x |
An object of class MAF or GISTIC |
Value
gene summary table
Examples
1 2 3 | laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
laml <- read.maf(maf = laml.maf)
getGeneSummary(laml)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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