multidna2multiphyDat: Conversions between multidna and multiphyDat

In thibautjombart/apex: Phylogenetic Methods for Multiple Gene Data

Conversions between multidna and multiphyDat

Description

The functions multidna2multiphyDat and multiphyDat2multidna are used to convert data between multidna and multiphyDat classes.

Usage

multidna2multiphyDat(x)

multiphyDat2multidna(x)

Arguments

x	a multidna or multiphyDat object.

Author(s)

Thibaut Jombart [e-mail], Zhian N. Kamvar, Klaus Schliep

See Also

• concatenate

• DNAbin2genind to convert single DNAbin objects.

Examples

## simple conversion with nicely ordered output
data(woodmouse)
genes <- list(gene1=woodmouse[,1:500], gene2=woodmouse[,501:965])
x <- new("multidna", genes)
x

## conversion multidna -> multiphyDat
y <- multidna2multiphyDat(x)
y

## check round trip
identical(x, multiphyDat2multidna(y))

thibautjombart/apex documentation built on Feb. 7, 2024, 7:13 a.m.