plot.dibbler: Plot input data for dibbler

In thibautjombart/dibbler: Investigation of Food-Borne Disease Outbreaks

Description

This function plots dibbler's input data as a network, using different symbols and colors for different types of nodes. It uses the package network.

Usage

## S3 method for class 'dibbler'
plot(x, y = NULL, col_pal = dibbler_pal2, ...)

Arguments

x	A dibbler object.
y	An optional variable from the linelist defining groups used to color the network.
col_pal	A color palette to be used for the groups; defaults to dibbler_pal2.
...	Further arguments passed to the plot.epicontacts method.

Author(s)

Thibaut Jombart [e-mail]

Examples

## Not run: 
if (require(outbreaks)) {

  v_data <- s_enteritidis_pt59$graph
  n_data <- data.frame(id = names(s_enteritidis_pt59$cluster),
                       cluster = s_enteritidis_pt59$cluster)

  x <- make_dibbler(v_data, n_data)
  x

  plot(x)
  plot(x, "cluster")
}

## End(Not run)

thibautjombart/dibbler documentation built on May 31, 2019, 9:56 a.m.