Description Usage Arguments Details Author(s) Examples
This function creates a list storing simulation settings - see details.
1 |
... |
named simulation settings - see details |
Simulation settings include:
x_min
: lower bound of spatial coordinates (x-axis)
x_max
: upper bound of spatial coordinates (x-axis)
y_min
: lower bound of spatial coordinates (y-axis)
y_max
: upper bound of spatial coordinates (y-axis)
sd_spatial
: standard deviation for the spatial dispersal, only
used for the default spatial kernel
spatial_kernel
: a function of 'x' (a vector of starting
coordinates) implementing a kernel for spatial dispersion; defaults to a
Normal distribution with standard deviation 1
genome_length
: number of nucleotides in the pathogen genome
mutation_rate
: per nucleotide and day
separation_lineages
: number of days to ancestral lineage for
newly introduced pathogens
Thibaut Jombart thibautjombart@gmail.com
1 2 | new_config()
new_config(genome_length = 100, x_max = 10)
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