dist_dna: Compute pairwise genetic distances

In thibautjombart/quicksim: Quick and simple outbreak simulator

Description

This function Compute pairwise genetic distances from vectors of mutations as generated in the simulations. The computed distance is the Hamming distance, i.e. the number of nucleotide differences between sequences.

Usage

dist_dna(x)

Arguments

x	A list of integer vectors, each of which represents the genome of a pathogen as positions of mutations.

Author(s)

Thibaut Jombart [e-mail]

Examples

dist_dna(list(integer(0), integer(0), 1, 1))
dist_dna(list(integer(0), integer(0), 1, 1, 1:2, 1:3, 1:4, 11:20))

thibautjombart/quicksim documentation built on May 5, 2019, 2:42 a.m.