get_zhou_recs: get_zhou_recs

In thomasbattram/usefunc: Personal repository for useful functions

get_zhou_recs

Description

Extract CpGs to exclude from zhou et al. 2017 (http://zwdzwd.github.io/InfiniumAnnotation) Can extract just CpGs or the table with reasons for exclusion

Usage

get_zhou_recs(
  outpath,
  listonly = TRUE,
  array = c("hm450", "epic"),
  overwrite = FALSE
)

Arguments

outpath	file path to output the data
listonly	a logical value. If 'TRUE', list of CpGs recommended to exlude are returned. If "FALSE", full table of CpGs with reasons for potentially removing them returned.
array	string. Array type being used, must be either "hm450" or "epic".
overwrite	a logical value. If 'TRUE' outpath is overwritten. If 'FALSE' it is not overwritten.

Value

Either a character vector of CpG sites to exclude from an array or a tibble with reasons to exlcude certain sites.

thomasbattram/usefunc documentation built on April 24, 2023, 1:46 p.m.