raw.findFiles: returns a list of files provided the search criteria

In thomasgredig/RAWdataR: Scientifically Reproducible RAW Data Processing

returns a list of files provided the search criteria

Description

returns a list of files provided the search criteria

Usage

raw.findFiles(
  pfad,
  project = "[^_]+",
  date = "[^_]+",
  user = "[^_]+",
  instrument = "[^_]+",
  sample = "[^_]+",
  md5 = "",
  fullPath = TRUE,
  recursive = FALSE
)

Arguments

pfad	path of RAW files
project	name of project
date	date in format YYYYMMDD
user	2 initials for user
instrument	name of instrument, such as 'vsm'
sample	sample name
md5	single string with comma separated abbreviated MD5 sums
fullPath	if TRUE, returns full path, otherwise filename only
recursive	if TRUE, also searchs subfolders

Value

list with filenames with certain checksum

Examples

pfad = raw.getSamplePath()
file.list = raw.findFiles(pfad, date='201606')  # all files from June 2019
print(basename(file.list))
md5String = raw.getMD5str(file.list)
file.list = raw.findFiles(pfad, md5 = md5String)
print(basename(file.list))

thomasgredig/RAWdataR documentation built on Nov. 6, 2024, 9:46 a.m.