R/syn_global.R

In thomasyu888/puresynapser: R client for Sage Bionetworks' Synapse API

# Declare global variables
syn_global <- new.env(parent = emptyenv())
# user agent
syn_global$ua <- NULL
# Synapse personal access token
syn_global$synapse_pat <- NULL
# concrete types
syn_global$concrete_types <- list(
  # Concrete types for StorageLocationSettings
  SYNAPSE_S3_STORAGE_LOCATION_SETTING = 'org.sagebionetworks.repo.model.project.S3StorageLocationSetting',
  EXTERNAL_S3_STORAGE_LOCATION_SETTING = 'org.sagebionetworks.repo.model.project.ExternalS3StorageLocationSetting',

  # Concrete types for UploadDestinations
  SYNAPSE_S3_UPLOAD_DESTINATION = 'org.sagebionetworks.repo.model.file.S3UploadDestination',
  EXTERNAL_UPLOAD_DESTINATION = 'org.sagebionetworks.repo.model.file.ExternalUploadDestination',
  EXTERNAL_S3_UPLOAD_DESTINATION = 'org.sagebionetworks.repo.model.file.ExternalS3UploadDestination',
  EXTERNAL_OBJECT_STORE_UPLOAD_DESTINATION = 'org.sagebionetworks.repo.model.file.ExternalObjectStoreUploadDestination',

  # Concrete types for FileHandles
  EXTERNAL_OBJECT_STORE_FILE_HANDLE = "org.sagebionetworks.repo.model.file.ExternalObjectStoreFileHandle",
  EXTERNAL_FILE_HANDLE = 'org.sagebionetworks.repo.model.file.ExternalFileHandle',
  S3_FILE_HANDLE = "org.sagebionetworks.repo.model.file.S3FileHandle",

  # Concrete types for TableUpdateResponse
  ROW_REFERENCE_SET_RESULTS = 'org.sagebionetworks.repo.model.table.RowReferenceSetResults',
  ENTITY_UPDATE_RESULTS = 'org.sagebionetworks.repo.model.table.EntityUpdateResults',
  TABLE_SCHEMA_CHANGE_RESPONSE = 'org.sagebionetworks.repo.model.table.TableSchemaChangeResponse',
  UPLOAD_TO_TABLE_RESULT = 'org.sagebionetworks.repo.model.table.UploadToTableResult',

  PARTIAL_ROW_SET = 'org.sagebionetworks.repo.model.table.PartialRowSet',
  APPENDABLE_ROWSET_REQUEST = 'org.sagebionetworks.repo.model.table.AppendableRowSetRequest',

  COLUMN_MODEL = 'org.sagebionetworks.repo.model.table.ColumnModel',

  # EntityTypes
  FILE_ENTITY = 'org.sagebionetworks.repo.model.FileEntity',
  FOLDER_ENTITY = 'org.sagebionetworks.repo.model.Folder',
  LINK_ENTITY = 'org.sagebionetworks.repo.model.Link',
  PROJECT_ENTITY = 'org.sagebionetworks.repo.model.Project',
  TABLE_ENTITY = 'org.sagebionetworks.repo.model.table.TableEntity',

  # upload requests
  MULTIPART_UPLOAD_REQUEST = 'org.sagebionetworks.repo.model.file.MultipartUploadRequest',
  MULTIPART_UPLOAD_COPY_REQUEST = 'org.sagebionetworks.repo.model.file.MultipartUploadCopyRequest'
)