thomazbastiaanssen/anansi
Annotation-Based Analysis of Specific Interactions

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Search the thomazbastiaanssen/anansi package
Vignettes
Functions
193
Source code
27
Man pages
22
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thomazbastiaanssen/anansi: Annotation-Based Analysis of Specific Interactions
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API

API for thomazbastiaanssen/anansi
Annotation-Based Analysis of Specific Interactions

Global functions
.check_aes Source code
.create_dotplot Source code
.test_coherent Source code
.wide2long Source code
AnansiWeb Man page Source code
AnansiWeb-class Man page
FMT_KOs Man page
FMT_metab Man page
FMT_metadata Man page
MultiFactor Man page Source code
MultiFactor-class Man page
R_disj Source code
R_emerg Source code
R_full Source code
SS Source code
[,MultiFactor,ANY,ANY,ANY-method Man page
[,MultiFactor,ANY,ANY-method Man page
[<-,MultiFactor,ANY,ANY,list-method Man page
[[,MultiFactor,ANY,ANY-method Man page
[[,MultiFactor,ANY-method Man page
[[<-,MultiFactor,ANY,ANY-method Man page
`dictionary` Man page
`tableY<-` Man page
anansi Man page Source code
anansi-package Man page
anansi.p.adjust Source code
anansiCor Man page Source code
anansiCorPvalue Man page Source code
anansiCorTestByGroup Man page Source code
anansiDiffCor Man page Source code
anansiTale-class Man page
as.MAE Man page
as.MultiAssayExperiment Man page
as.data.frame,AnansiWeb-method Man page
as.data.frame.AnansiWeb Source code
as.data.frame.AnansiWeb-method Man page
as.list,AnansiWeb-method Man page
as.list,MultiFactor-method Man page
as.list.AnansiWeb Man page
as.list.MultiFactor Man page Source code
asMAE Man page Source code
asMultiAssayExperiment Man page
asMultiFactor Man page
build.mm Source code
c,MultiFactor-method Man page
call_groupwise Source code
charToIntDF Source code
checkMergers Source code
check_groups Source code
coerce,AnansiWeb-data.frame Man page
coerce,AnansiWeb-list Man page
colsInRow Source code
colsWithRow Source code
colwiseTSS Source code
dfmat Source code
dictionary Man page
dictionary,AnansiWeb-method Man page
dictionary,MultiFactor-method Man page
dictionary<- Man page
dictionary<-,AnansiWeb-method Man page
dictionary<-,MultiFactor-method Man page
dictionaryMatrix Source code
dim,AnansiWeb-method Man page
dim,MultiFactor-method Man page
dimnames,AnansiWeb-method Man page
dimnames,MultiFactor-method Man page
droplevels,MultiFactor-method Man page
droplevels.MultiFactor Man page Source code
ec2cpd Man page
ec2ko Man page
factToIntDF Source code
factorInputMultiFactorLevels Source code
factorToMF Source code
fast.qr.resid Source code
frame.tale Source code
frame.tale.cor Source code
frame.tale.ols Source code
generateMultiFactorLevels Source code
getAnansi Man page
getAnansi,MultiAssayExperiment-method Man page
getEdgeList Man page
getEdgeList,MultiFactor-method Man page
getFeaturePairs Man page
getFeaturePairs,AnansiWeb-method Man page
getFeaturePairs.AnansiWeb Source code
getGraph Man page
getGraph,MultiFactor-method Man page
getGraph,list-method Man page
getWeb Man page
getWeb,MultiAssayExperiment-method Man page
get_PF Source code
get_x.fct Source code
index.disj Source code
index.high Source code
index.self.high Source code
is.categorical Man page
kegg_link Man page Source code
krebs Man page
krebsDemoWeb Man page Source code
levels,MultiFactor-method Man page
levels.MultiFactor Man page Source code
levels<-,MultiFactor-method Man page
listCharToIntegers Source code
listFactRefactor Source code
lv_list_char Source code
make_contrasts Source code
make_saturated_model Source code
mapFromLink Source code
mapMultiFactor Source code
mapply,AnansiWeb-method Man page
mergeElements Source code
mergeMultiFactorInds Source code
mergeMultiFactorLvs Source code
metadata,AnansiWeb-method Man page
metadata<-,AnansiWeb-method Man page
named_group_list Man page
named_term_list Man page
names,AnansiWeb-method Man page
names,MultiFactor-method Man page
oddify Source code
plotAnansi Man page
plotAnansi,data.frame-method Man page
prepInput Source code
randomAnansi Man page
randomLinkDF Source code
randomMultiFactor Man page Source code
randomWeb Man page Source code
randomWebDic Source code
randomWebFull Source code
randomWebMetadata Source code
randomWebTab Source code
result.df Source code
rowsInCol Source code
rowsWithCol Source code
show,AnansiWeb-method Man page
show,MultiFactor-method Man page
stepSeq Source code
subset,MultiFactor-method Man page
subsetByPath Source code
subset_metadata Source code
tableX Man page
tableX,AnansiWeb-method Man page
tableX<- Man page
tableX<-,AnansiWeb-method Man page
tableY Man page
tableY,AnansiWeb-method Man page
tableY<- Man page
tableY<-,AnansiWeb-method Man page
tell_F Source code
tell_P Source code
tell_T Source code
tell_df1 Source code
tell_df2 Source code
tell_dfr Source code
tell_e Source code
termSeq Source code
trimByInput Source code
trimMultiFactor Source code
unfactor,MultiFactor-method Man page
validCharLinkDF Source code
validFactLinkDF Source code
validIntLinkDF Source code
validLevels Source code
validLinkDF Source code
validMultiFactor Source code
validWeb Source code
valid_selection Source code
weaveKEGG Man page Source code
weaveWeb Man page Source code
weaveWeb.default Man page Source code
weaveWeb.formula Man page Source code
web_missing_link Source code
which,AnansiWeb-method Man page
which.AnansiWeb Source code
thomazbastiaanssen/anansi documentation built on June 9, 2025, 3:59 p.m.

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