Man pages for tidymass/massdatabase
Play with databases about mass spectrometry
| convert2metid | Convert data (list, from read_msp_data function) to metID... |
| convert_bigg_universal2metid | Convert BiGG Universal Metabolite Data to MetID Format |
| convert_chebi2metid | Convert BIGG universal metabolites (data.frame, from... |
| convert_foodb2metid | Convert FOODB compound data (list, from... |
| convert_gnps2metid | Convert GNPS data (list) to metID format database |
| convert_hmdb2metid | Convert HMDB data (MS1 or MS2) to metID format database |
| convert_kegg2metid | Convert KEGG compound/drug data (data.frame, from... |
| convert_kegg2metpath | Convert KEGG pathway data (list, from read_kegg_pathway... |
| convert_lipidbank2metid | Convert lipid bank data (data.frame) to metID format database |
| convert_lipidmaps2metid | Convert LIPIDMAPS compound data (list, from... |
| convert_massbank2metid | Convert MassBank data (list) to metID format database |
| convert_massbank2metid_nist | Convert MassBank data (list, from NIST) to metID format... |
| convert_massbank2metid_riken | Convert MassBank data (list, from RIKEN) to metID format... |
| convert_mona2metid | Convert MoNA data (list) to metID format database |
| convert_nist2metid | Convert GNPS data (list) to metID format database |
| convert_smpdb2metpath | Convert smpdb pathway data (list, from read_smpdb_pathway... |
| convert_species2source | Convert species to source |
| download_bigg_model | Download BIGG model data |
| download_bigg_universal_metabolite | Download BiGG Universal Metabolite Data |
| download_chebi_compound | Download the CHEBI compound database |
| download_foodb_compound | Download FOODB compound data |
| download_gnps_spectral_library | Download GNPS MS2 database (msp) |
| download_kegg_compound | Download KEGG compound data |
| download_kegg_drug | Download KEGG drug data |
| download_kegg_pathway | Download KEGG pathway data |
| download_kegg_rclass | Download KEGG reaction class database |
| download_kegg_reaction | Download KEGG reaction database |
| download_lipidbank_lipid_class | Download lIPIDBANK database |
| download_lipidmaps_lipid | Download LIPIDMAPS data |
| download_massbank_compound | Download the MassBank compound database |
| download_pubchem_compound | Request the information of one compound from PubChem |
| download_smpdb_pathway | Download SMPDB pathway data |
| get_words_similarity | Get the similarity between two words |
| massdatabase_logo | Show the base information of massdatabase pacakge |
| massdatabase_packages | List all packages in the massdatabase |
| match_table | match_table |
| parse_pubchem_compound | Parse the json or xml compound data from PubChem |
| parse_reactome_reaction | Parse the sbml reaction data from Reactome |
| read_bigg_model | Read the BIGG model from download_bigg_model function |
| read_bigg_universal_metabolite | Read BiGG Universal Metabolite Data |
| read_chebi_compound | Read the CHEBI compound database from download_chebi_compound... |
| read_foodb_compound | Read the FOODB compound database from download_foodb_compound... |
| read_gpml | Read GPML format data from wikipathway database |
| read_kegg_compound | Read the KEGG compound database from download_kegg_compound... |
| read_kegg_drug | Read the KEGG drug database from download_kegg_drug function |
| read_kegg_pathway | Read the KEGG pathway database from download_kegg_pathway... |
| read_msp_data | read_msp_data |
| read_msp_data_gnps | read_msp_data_gnps |
| read_msp_data_massbank | read_msp_data_massbank |
| read_msp_data_mona | read_msp_data_mona |
| read_msp_data_nist | read_msp_data_nist |
| read_sdf_data_lipidmaps | Read the sdf database from download_lipidmaps_lipid function |
| read_smpdb_pathway | Read the SMPDB pathway database from download_smpdb_pathway... |
| read_xml_data | read_xml_data |
| read_xml_data_hmdb | read_xml_data_hmdb |
| request_bigg_model_info | Request BIGG model information |
| request_bigg_reaction_info | Request BIGG reaction information for specific species... |
| request_bigg_universal_metabolite | Request BIGG metabolite |
| request_bigg_universal_metabolite_info | Request BIGG universal metabolite information |
| request_bigg_universal_reaction | Request BIGG reaction |
| request_bigg_universal_reaction_info | Request BIGG universal reaction information |
| request_bigg_version | Request BiGG Database Version |
| request_chebi_compound | Request CHEBI compound |
| request_foodb_compound | Request one specific the compound information in FoodB |
| request_foodb_compound_info | Request all the food information in FoodB |
| request_foodb_compound_info_crawler | Scrape Compound Information from FooDB |
| request_foodb_compound_ms2 | Request MS2 spectra of one compound in FoodB |
| request_hmdb_metabolite | Request one specific the metabolite information in HMDB |
| request_hmdb_reaction | Request one specific reaction information in HMDB |
| request_kegg_compound | Request one specific compound information in KEGG |
| request_kegg_compound_info | Request all compound information in KEGG |
| request_kegg_drug | Request one specific drug information in KEGG |
| request_kegg_drug_info | Request all drug information in KEGG |
| request_kegg_pathway | Request one specific pathway information in KEGG |
| request_kegg_pathway_info | Request all pathway information in KEGG |
| request_kegg_rclass | Request one specific reaction class information in KEGG |
| request_kegg_rclass_info | Request all reaction class information in KEGG |
| request_kegg_reaction | Request one specific reaction information in KEGG |
| request_kegg_reaction_info | Request all reaction information in KEGG |
| request_lipidbank_lipid_class | Request Lipidbank database |
| request_lipidmaps_lipid | Request one lipid information in LIPIDMAPS |
| request_pubchem_compound | Request the information of one compound from PubChem |
| request_reactome_reaction | Request one specific reaction information in Reactome |
| request_wikipedia_compound | Request the information of one compound |
| request_wikipedia_scientific_classification | Request the scientific classification of one species from... |
| search_hmdb_database | Search metabolite in HMDB |
| show_progresser | show_progresser |
| smpdb_primary_pathway_id | smpdb_primary_pathway_id |
