revdep/failures.md

aggregateBioVar

Run revdepcheck::cloud_details(, "aggregateBioVar") for more info

Error before installation

Devel







CRAN







airpart

Run revdepcheck::cloud_details(, "airpart") for more info

Error before installation

Devel







CRAN







alevinQC

Run revdepcheck::cloud_details(, "alevinQC") for more info

Error before installation

Devel







CRAN







AlpsNMR

Run revdepcheck::cloud_details(, "AlpsNMR") for more info

Error before installation

Devel







CRAN







AnVIL

Run revdepcheck::cloud_details(, "AnVIL") for more info

Error before installation

Devel







CRAN







APL

Run revdepcheck::cloud_details(, "APL") for more info

Error before installation

Devel







CRAN







ArrayExpress

Run revdepcheck::cloud_details(, "ArrayExpress") for more info

Error before installation

Devel







CRAN







autonomics

Run revdepcheck::cloud_details(, "autonomics") for more info

Error before installation

Devel







CRAN







bandle

Run revdepcheck::cloud_details(, "bandle") for more info

Error before installation

Devel







CRAN







barcodetrackR

Run revdepcheck::cloud_details(, "barcodetrackR") for more info

Error before installation

Devel







CRAN







bayesdfa

Run revdepcheck::cloud_details(, "bayesdfa") for more info

In both

Installation

Devel

* installing *source* package ‘bayesdfa’ ...
** package ‘bayesdfa’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’
using C++17


g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include    -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:397,
...
/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90:   required from ‘Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22:   required from ‘Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::operator const Scalar() const [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Option = 0; Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::Scalar = double]’
/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56:   required from ‘double stan::mcmc::dense_e_metric<Model, BaseRNG>::T(stan::mcmc::dense_e_point&) [with Model = model_dfa_namespace::model_dfa; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10:   required from here
/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__vector(2) double’} [-Wignored-attributes]
g++: fatal error: Killed signal terminated program cc1plus
compilation terminated.
make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_dfa.o] Error 1
ERROR: compilation failed for package ‘bayesdfa’
* removing ‘/tmp/workdir/bayesdfa/new/bayesdfa.Rcheck/bayesdfa’


CRAN

* installing *source* package ‘bayesdfa’ ...
** package ‘bayesdfa’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’
using C++17


g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include    -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:397,
...
/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90:   required from ‘Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22:   required from ‘Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::operator const Scalar() const [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Option = 0; Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::Scalar = double]’
/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56:   required from ‘double stan::mcmc::dense_e_metric<Model, BaseRNG>::T(stan::mcmc::dense_e_point&) [with Model = model_dfa_namespace::model_dfa; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10:   required from here
/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__vector(2) double’} [-Wignored-attributes]
g++: fatal error: Killed signal terminated program cc1plus
compilation terminated.
make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_dfa.o] Error 1
ERROR: compilation failed for package ‘bayesdfa’
* removing ‘/tmp/workdir/bayesdfa/old/bayesdfa.Rcheck/bayesdfa’


benchmarkfdrData2019

Run revdepcheck::cloud_details(, "benchmarkfdrData2019") for more info

Error before installation

Devel







CRAN







BindingSiteFinder

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Error before installation

Devel







CRAN







BiocBook

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Error before installation

Devel







CRAN







BiocPkgTools

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Error before installation

Devel







CRAN







BiocSet

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Error before installation

Devel







CRAN







biocthis

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Error before installation

Devel







CRAN







BioNERO

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Error before installation

Devel







CRAN







biovizBase

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Error before installation

Devel







CRAN







biscuiteer

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Error before installation

Devel







CRAN







brendaDb

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Error before installation

Devel







CRAN







brolgar

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Error before installation

Devel







CRAN







cageminer

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Error before installation

Devel







CRAN







CBEA

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Error before installation

Devel







CRAN







CBNplot

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Error before installation

Devel







CRAN







cbpManager

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Error before installation

Devel







CRAN







celaref

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Error before installation

Devel







CRAN







CellaRepertorium

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Error before installation

Devel







CRAN







CellBench

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Error before installation

Devel







CRAN







censcyt

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Error before installation

Devel







CRAN







Cepo

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Error before installation

Devel







CRAN







ceRNAnetsim

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Error before installation

Devel







CRAN







cfdnakit

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Error before installation

Devel







CRAN







cfDNAPro

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Error before installation

Devel







CRAN







circRNAprofiler

Run revdepcheck::cloud_details(, "circRNAprofiler") for more info

Error before installation

Devel







CRAN







CircSeqAlignTk

Run revdepcheck::cloud_details(, "CircSeqAlignTk") for more info

Error before installation

Devel







CRAN







CiteFuse

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Error before installation

Devel







CRAN







ClassifyR

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Error before installation

Devel







CRAN







clusterProfiler

Run revdepcheck::cloud_details(, "clusterProfiler") for more info

Error before installation

Devel







CRAN







clustifyr

Run revdepcheck::cloud_details(, "clustifyr") for more info

Error before installation

Devel







CRAN







cogeqc

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Error before installation

Devel







CRAN







comapr

Run revdepcheck::cloud_details(, "comapr") for more info

Error before installation

Devel







CRAN







COMPASS

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Error before installation

Devel







CRAN







ComPrAn

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Error before installation

Devel







CRAN







concordexR

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Error before installation

Devel







CRAN







CoreGx

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Error before installation

Devel







CRAN







cosmosR

Run revdepcheck::cloud_details(, "cosmosR") for more info

Error before installation

Devel







CRAN







COTAN

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Error before installation

Devel







CRAN







crisprVerse

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Error before installation

Devel







CRAN







cTRAP

Run revdepcheck::cloud_details(, "cTRAP") for more info

Error before installation

Devel







CRAN







CuratedAtlasQueryR

Run revdepcheck::cloud_details(, "CuratedAtlasQueryR") for more info

Error before installation

Devel







CRAN







curatedMetagenomicData

Run revdepcheck::cloud_details(, "curatedMetagenomicData") for more info

Error before installation

Devel







CRAN







curatedTBData

Run revdepcheck::cloud_details(, "curatedTBData") for more info

Error before installation

Devel







CRAN







CyTOFpower

Run revdepcheck::cloud_details(, "CyTOFpower") for more info

Error before installation

Devel







CRAN







CytoGLMM

Run revdepcheck::cloud_details(, "CytoGLMM") for more info

Error before installation

Devel







CRAN







cytoKernel

Run revdepcheck::cloud_details(, "cytoKernel") for more info

Error before installation

Devel







CRAN







CytoPipeline

Run revdepcheck::cloud_details(, "CytoPipeline") for more info

Error before installation

Devel







CRAN







dce

Run revdepcheck::cloud_details(, "dce") for more info

Error before installation

Devel







CRAN







dearseq

Run revdepcheck::cloud_details(, "dearseq") for more info

Error before installation

Devel







CRAN







decoupleR

Run revdepcheck::cloud_details(, "decoupleR") for more info

Error before installation

Devel







CRAN







DEGreport

Run revdepcheck::cloud_details(, "DEGreport") for more info

Error before installation

Devel







CRAN







DIAlignR

Run revdepcheck::cloud_details(, "DIAlignR") for more info

Error before installation

Devel







CRAN







dStruct

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Error before installation

Devel







CRAN







easier

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Error before installation

Devel







CRAN







easyalluvial

Run revdepcheck::cloud_details(, "easyalluvial") for more info

Error before installation

Devel







CRAN







easyreporting

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Error before installation

Devel







CRAN







enrichplot

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Error before installation

Devel







CRAN







EpiMix

Run revdepcheck::cloud_details(, "EpiMix") for more info

Error before installation

Devel







CRAN







escape

Run revdepcheck::cloud_details(, "escape") for more info

Error before installation

Devel







CRAN







escheR

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Error before installation

Devel







CRAN







evaluator

Run revdepcheck::cloud_details(, "evaluator") for more info

Error before installation

Devel







CRAN







extraChIPs

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Error before installation

Devel







CRAN







factR

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Error before installation

Devel







CRAN







fenr

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Error before installation

Devel







CRAN







FindIT2

Run revdepcheck::cloud_details(, "FindIT2") for more info

Error before installation

Devel







CRAN







flowGate

Run revdepcheck::cloud_details(, "flowGate") for more info

Error before installation

Devel







CRAN







FlowSOM

Run revdepcheck::cloud_details(, "FlowSOM") for more info

Error before installation

Devel







CRAN







flowTime

Run revdepcheck::cloud_details(, "flowTime") for more info

Error before installation

Devel







CRAN







gemma.R

Run revdepcheck::cloud_details(, "gemma.R") for more info

Error before installation

Devel







CRAN







genekitr

Run revdepcheck::cloud_details(, "genekitr") for more info

Error before installation

Devel

* using log directory ‘/tmp/workdir/genekitr/new/genekitr.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
    GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘genekitr/DESCRIPTION’ ... OK
...
* this is package ‘genekitr’ version ‘1.2.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘clusterProfiler’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR





CRAN

* using log directory ‘/tmp/workdir/genekitr/old/genekitr.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
    GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘genekitr/DESCRIPTION’ ... OK
...
* this is package ‘genekitr’ version ‘1.2.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘clusterProfiler’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR





GeneTonic

Run revdepcheck::cloud_details(, "GeneTonic") for more info

Error before installation

Devel







CRAN







GenomicDataCommons

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Error before installation

Devel







CRAN







GeomxTools

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Error before installation

Devel







CRAN







gg4way

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Error before installation

Devel







CRAN







ggbio

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Error before installation

Devel







CRAN







ggcyto

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Error before installation

Devel







CRAN







ggmanh

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Error before installation

Devel







CRAN







ggsc

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Error before installation

Devel







CRAN







ggtree

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Error before installation

Devel







CRAN







ggtreeExtra

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Error before installation

Devel







CRAN







glmGamPoi

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Error before installation

Devel







CRAN







GloScope

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Error before installation

Devel







CRAN







GOSemSim

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Error before installation

Devel







CRAN







grandR

Run revdepcheck::cloud_details(, "grandR") for more info

Error before installation

Devel

* using log directory ‘/tmp/workdir/grandR/new/grandR.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
    GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘grandR/DESCRIPTION’ ... OK
...
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
  ‘getting-started.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 2 NOTEs





CRAN

* using log directory ‘/tmp/workdir/grandR/old/grandR.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
    GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘grandR/DESCRIPTION’ ... OK
...
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
  ‘getting-started.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 2 NOTEs





GRaNIE

Run revdepcheck::cloud_details(, "GRaNIE") for more info

Error before installation

Devel







CRAN







granulator

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Error before installation

Devel







CRAN







graphite

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Error before installation

Devel







CRAN







GSEAmining

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Error before installation

Devel







CRAN







GUIDEseq

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Error before installation

Devel







CRAN







HCAExplorer

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Error before installation

Devel







CRAN







hermes

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Error before installation

Devel







CRAN







HiCDCPlus

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Error before installation

Devel







CRAN







HIPPO

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Error before installation

Devel







CRAN







hoodscanR

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Error before installation

Devel







CRAN







hypeR

Run revdepcheck::cloud_details(, "hypeR") for more info

Error before installation

Devel







CRAN







iCNV

Run revdepcheck::cloud_details(, "iCNV") for more info

Error before installation

Devel







CRAN







ideal

Run revdepcheck::cloud_details(, "ideal") for more info

Error before installation

Devel







CRAN







idpr

Run revdepcheck::cloud_details(, "idpr") for more info

Error before installation

Devel







CRAN







immcp

Run revdepcheck::cloud_details(, "immcp") for more info

Error before installation

Devel

* using log directory ‘/tmp/workdir/immcp/new/immcp.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
    GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘immcp/DESCRIPTION’ ... OK
...
* this is package ‘immcp’ version ‘1.0.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'clusterProfiler', 'DOSE'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR





CRAN

* using log directory ‘/tmp/workdir/immcp/old/immcp.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
    GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘immcp/DESCRIPTION’ ... OK
...
* this is package ‘immcp’ version ‘1.0.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'clusterProfiler', 'DOSE'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR





immunotation

Run revdepcheck::cloud_details(, "immunotation") for more info

Error before installation

Devel







CRAN







InterCellar

Run revdepcheck::cloud_details(, "InterCellar") for more info

Error before installation

Devel







CRAN







IntOMICS

Run revdepcheck::cloud_details(, "IntOMICS") for more info

Error before installation

Devel







CRAN







ISAnalytics

Run revdepcheck::cloud_details(, "ISAnalytics") for more info

Error before installation

Devel







CRAN







isomiRs

Run revdepcheck::cloud_details(, "isomiRs") for more info

Error before installation

Devel







CRAN







isoreader

Run revdepcheck::cloud_details(, "isoreader") for more info

Error before installation

Devel







CRAN







jsontools

Run revdepcheck::cloud_details(, "jsontools") for more info

Error before installation

Devel







CRAN







katdetectr

Run revdepcheck::cloud_details(, "katdetectr") for more info

Error before installation

Devel







CRAN







ldblock

Run revdepcheck::cloud_details(, "ldblock") for more info

Error before installation

Devel







CRAN







lipidr

Run revdepcheck::cloud_details(, "lipidr") for more info

Error before installation

Devel







CRAN







loon.ggplot

Run revdepcheck::cloud_details(, "loon.ggplot") for more info

Error before installation

Devel

* using log directory ‘/tmp/workdir/loon.ggplot/new/loon.ggplot.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
    GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘loon.ggplot/DESCRIPTION’ ... OK
...
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘loon’

Package suggested but not available for checking: ‘zenplots’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR





CRAN

* using log directory ‘/tmp/workdir/loon.ggplot/old/loon.ggplot.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
    GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘loon.ggplot/DESCRIPTION’ ... OK
...
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘loon’

Package suggested but not available for checking: ‘zenplots’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR





mariner

Run revdepcheck::cloud_details(, "mariner") for more info

Error before installation

Devel







CRAN







marr

Run revdepcheck::cloud_details(, "marr") for more info

Error before installation

Devel







CRAN







MatrixQCvis

Run revdepcheck::cloud_details(, "MatrixQCvis") for more info

Error before installation

Devel







CRAN







memes

Run revdepcheck::cloud_details(, "memes") for more info

Error before installation

Devel







CRAN







metabCombiner

Run revdepcheck::cloud_details(, "metabCombiner") for more info

Error before installation

Devel







CRAN







MetaScope

Run revdepcheck::cloud_details(, "MetaScope") for more info

Error before installation

Devel







CRAN







MethReg

Run revdepcheck::cloud_details(, "MethReg") for more info

Error before installation

Devel







CRAN







MetNet

Run revdepcheck::cloud_details(, "MetNet") for more info

Error before installation

Devel







CRAN







mia

Run revdepcheck::cloud_details(, "mia") for more info

Error before installation

Devel







CRAN







miaViz

Run revdepcheck::cloud_details(, "miaViz") for more info

Error before installation

Devel







CRAN







microbiomeExplorer

Run revdepcheck::cloud_details(, "microbiomeExplorer") for more info

Error before installation

Devel







CRAN







microbiomeMarker

Run revdepcheck::cloud_details(, "microbiomeMarker") for more info

Error before installation

Devel







CRAN







MicrobiotaProcess

Run revdepcheck::cloud_details(, "MicrobiotaProcess") for more info

Error before installation

Devel







CRAN







microSTASIS

Run revdepcheck::cloud_details(, "microSTASIS") for more info

Error before installation

Devel







CRAN







midasHLA

Run revdepcheck::cloud_details(, "midasHLA") for more info

Error before installation

Devel







CRAN







mistyR

Run revdepcheck::cloud_details(, "mistyR") for more info

Error before installation

Devel







CRAN







MoleculeExperiment

Run revdepcheck::cloud_details(, "MoleculeExperiment") for more info

Error before installation

Devel







CRAN







MOMA

Run revdepcheck::cloud_details(, "MOMA") for more info

Error before installation

Devel







CRAN







MOSim

Run revdepcheck::cloud_details(, "MOSim") for more info

Error before installation

Devel







CRAN







MQmetrics

Run revdepcheck::cloud_details(, "MQmetrics") for more info

Error before installation

Devel







CRAN







MSA2dist

Run revdepcheck::cloud_details(, "MSA2dist") for more info

Error before installation

Devel







CRAN







MSnID

Run revdepcheck::cloud_details(, "MSnID") for more info

Error before installation

Devel







CRAN







MSPrep

Run revdepcheck::cloud_details(, "MSPrep") for more info

Error before installation

Devel







CRAN







multiGSEA

Run revdepcheck::cloud_details(, "multiGSEA") for more info

Error before installation

Devel







CRAN







MultiRNAflow

Run revdepcheck::cloud_details(, "MultiRNAflow") for more info

Error before installation

Devel







CRAN







musicatk

Run revdepcheck::cloud_details(, "musicatk") for more info

Error before installation

Devel







CRAN







NanoMethViz

Run revdepcheck::cloud_details(, "NanoMethViz") for more info

Error before installation

Devel







CRAN







NanoporeRNASeq

Run revdepcheck::cloud_details(, "NanoporeRNASeq") for more info

Error before installation

Devel







CRAN







nanotatoR

Run revdepcheck::cloud_details(, "nanotatoR") for more info

Error before installation

Devel







CRAN







NanoTube

Run revdepcheck::cloud_details(, "NanoTube") for more info

Error before installation

Devel







CRAN







nearBynding

Run revdepcheck::cloud_details(, "nearBynding") for more info

Error before installation

Devel







CRAN







ngsReports

Run revdepcheck::cloud_details(, "ngsReports") for more info

Error before installation

Devel







CRAN







nipalsMCIA

Run revdepcheck::cloud_details(, "nipalsMCIA") for more info

Error before installation

Devel







CRAN







NPARC

Run revdepcheck::cloud_details(, "NPARC") for more info

Error before installation

Devel







CRAN







nullranges

Run revdepcheck::cloud_details(, "nullranges") for more info

Error before installation

Devel







CRAN







OlinkAnalyze

Run revdepcheck::cloud_details(, "OlinkAnalyze") for more info

Error before installation

Devel

* using log directory ‘/tmp/workdir/OlinkAnalyze/new/OlinkAnalyze.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
    GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘OlinkAnalyze/DESCRIPTION’ ... OK
...
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
  ‘OutlierExclusion.Rmd’ using ‘UTF-8’... OK
  ‘Vignett.Rmd’ using ‘UTF-8’... OK
  ‘bridging_introduction.Rmd’ using ‘UTF-8’... OK
  ‘plate_randomizer.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 1 NOTE





CRAN

* using log directory ‘/tmp/workdir/OlinkAnalyze/old/OlinkAnalyze.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
    GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘OlinkAnalyze/DESCRIPTION’ ... OK
...
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
  ‘OutlierExclusion.Rmd’ using ‘UTF-8’... OK
  ‘Vignett.Rmd’ using ‘UTF-8’... OK
  ‘bridging_introduction.Rmd’ using ‘UTF-8’... OK
  ‘plate_randomizer.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 1 NOTE





OmnipathR

Run revdepcheck::cloud_details(, "OmnipathR") for more info

Error before installation

Devel







CRAN







optimalFlow

Run revdepcheck::cloud_details(, "optimalFlow") for more info

Error before installation

Devel







CRAN







Organism.dplyr

Run revdepcheck::cloud_details(, "Organism.dplyr") for more info

Error before installation

Devel







CRAN







orthos

Run revdepcheck::cloud_details(, "orthos") for more info

Error before installation

Devel







CRAN







PanomiR

Run revdepcheck::cloud_details(, "PanomiR") for more info

Error before installation

Devel







CRAN







PanViz

Run revdepcheck::cloud_details(, "PanViz") for more info

Error before installation

Devel







CRAN







pareg

Run revdepcheck::cloud_details(, "pareg") for more info

Error before installation

Devel







CRAN







PAST

Run revdepcheck::cloud_details(, "PAST") for more info

Error before installation

Devel







CRAN







PDATK

Run revdepcheck::cloud_details(, "PDATK") for more info

Error before installation

Devel







CRAN







PhosR

Run revdepcheck::cloud_details(, "PhosR") for more info

Error before installation

Devel







CRAN







plotgardener

Run revdepcheck::cloud_details(, "plotgardener") for more info

Error before installation

Devel







CRAN







plotGrouper

Run revdepcheck::cloud_details(, "plotGrouper") for more info

Error before installation

Devel







CRAN







plyinteractions

Run revdepcheck::cloud_details(, "plyinteractions") for more info

Error before installation

Devel







CRAN







plyranges

Run revdepcheck::cloud_details(, "plyranges") for more info

Error before installation

Devel







CRAN







pmdplyr

Run revdepcheck::cloud_details(, "pmdplyr") for more info

Error before installation

Devel







CRAN







ppcseq

Run revdepcheck::cloud_details(, "ppcseq") for more info

Error before installation

Devel







CRAN







proActiv

Run revdepcheck::cloud_details(, "proActiv") for more info

Error before installation

Devel







CRAN







profileplyr

Run revdepcheck::cloud_details(, "profileplyr") for more info

Error before installation

Devel







CRAN







ProteoDisco

Run revdepcheck::cloud_details(, "ProteoDisco") for more info

Error before installation

Devel







CRAN







protGear

Run revdepcheck::cloud_details(, "protGear") for more info

Error before installation

Devel







CRAN







ptairMS

Run revdepcheck::cloud_details(, "ptairMS") for more info

Error before installation

Devel







CRAN







qckitfastq

Run revdepcheck::cloud_details(, "qckitfastq") for more info

Error before installation

Devel







CRAN







qmtools

Run revdepcheck::cloud_details(, "qmtools") for more info

Error before installation

Devel







CRAN







qPLEXanalyzer

Run revdepcheck::cloud_details(, "qPLEXanalyzer") for more info

Error before installation

Devel







CRAN







QTLExperiment

Run revdepcheck::cloud_details(, "QTLExperiment") for more info

Error before installation

Devel







CRAN







quantiseqr

Run revdepcheck::cloud_details(, "quantiseqr") for more info

Error before installation

Devel







CRAN







RAIDS

Run revdepcheck::cloud_details(, "RAIDS") for more info

Error before installation

Devel







CRAN







Rcpi

Run revdepcheck::cloud_details(, "Rcpi") for more info

Error before installation

Devel







CRAN







ReactomeGraph4R

Run revdepcheck::cloud_details(, "ReactomeGraph4R") for more info

Error before installation

Devel







CRAN







restfulSE

Run revdepcheck::cloud_details(, "restfulSE") for more info

Error before installation

Devel







CRAN







RiboCrypt

Run revdepcheck::cloud_details(, "RiboCrypt") for more info

Error before installation

Devel







CRAN







ribor

Run revdepcheck::cloud_details(, "ribor") for more info

Error before installation

Devel







CRAN







rifi

Run revdepcheck::cloud_details(, "rifi") for more info

Error before installation

Devel







CRAN







rifiComparative

Run revdepcheck::cloud_details(, "rifiComparative") for more info

Error before installation

Devel







CRAN







RNAseqCovarImpute

Run revdepcheck::cloud_details(, "RNAseqCovarImpute") for more info

Error before installation

Devel







CRAN







RVA

Run revdepcheck::cloud_details(, "RVA") for more info

Error before installation

Devel

* using log directory ‘/tmp/workdir/RVA/new/RVA.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
    GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘RVA/DESCRIPTION’ ... OK
...
* this is package ‘RVA’ version ‘0.0.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘clusterProfiler’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR





CRAN

* using log directory ‘/tmp/workdir/RVA/old/RVA.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
    GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘RVA/DESCRIPTION’ ... OK
...
* this is package ‘RVA’ version ‘0.0.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘clusterProfiler’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR





scater

Run revdepcheck::cloud_details(, "scater") for more info

Error before installation

Devel







CRAN







sccomp

Run revdepcheck::cloud_details(, "sccomp") for more info

Error before installation

Devel







CRAN







scFeatureFilter

Run revdepcheck::cloud_details(, "scFeatureFilter") for more info

Error before installation

Devel







CRAN







scider

Run revdepcheck::cloud_details(, "scider") for more info

Error before installation

Devel







CRAN







scifer

Run revdepcheck::cloud_details(, "scifer") for more info

Error before installation

Devel







CRAN







scPipe

Run revdepcheck::cloud_details(, "scPipe") for more info

Error before installation

Devel







CRAN







SCpubr

Run revdepcheck::cloud_details(, "SCpubr") for more info

Error before installation

Devel

* using log directory ‘/tmp/workdir/SCpubr/new/SCpubr.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
    GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘SCpubr/DESCRIPTION’ ... OK
...
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... OK
  Running ‘testthat.R’
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
  ‘reference_manual.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 1 NOTE





CRAN

* using log directory ‘/tmp/workdir/SCpubr/old/SCpubr.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
    GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘SCpubr/DESCRIPTION’ ... OK
...
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... OK
  Running ‘testthat.R’
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
  ‘reference_manual.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 1 NOTE





ScreenR

Run revdepcheck::cloud_details(, "ScreenR") for more info

Error before installation

Devel







CRAN







scRepertoire

Run revdepcheck::cloud_details(, "scRepertoire") for more info

Error before installation

Devel







CRAN







seqCAT

Run revdepcheck::cloud_details(, "seqCAT") for more info

Error before installation

Devel







CRAN







shinyepico

Run revdepcheck::cloud_details(, "shinyepico") for more info

Error before installation

Devel







CRAN







single

Run revdepcheck::cloud_details(, "single") for more info

Error before installation

Devel







CRAN







singleCellTK

Run revdepcheck::cloud_details(, "singleCellTK") for more info

Error before installation

Devel







CRAN







snapcount

Run revdepcheck::cloud_details(, "snapcount") for more info

Error before installation

Devel







CRAN







SpatialCPie

Run revdepcheck::cloud_details(, "SpatialCPie") for more info

Error before installation

Devel







CRAN







SpatialFeatureExperiment

Run revdepcheck::cloud_details(, "SpatialFeatureExperiment") for more info

Error before installation

Devel







CRAN







SPIAT

Run revdepcheck::cloud_details(, "SPIAT") for more info

Error before installation

Devel







CRAN







spicyR

Run revdepcheck::cloud_details(, "spicyR") for more info

Error before installation

Devel







CRAN







splatter

Run revdepcheck::cloud_details(, "splatter") for more info

Error before installation

Devel







CRAN







SpotClean

Run revdepcheck::cloud_details(, "SpotClean") for more info

Error before installation

Devel







CRAN







sSNAPPY

Run revdepcheck::cloud_details(, "sSNAPPY") for more info

Error before installation

Devel







CRAN







standR

Run revdepcheck::cloud_details(, "standR") for more info

Error before installation

Devel







CRAN







StructuralVariantAnnotation

Run revdepcheck::cloud_details(, "StructuralVariantAnnotation") for more info

Error before installation

Devel







CRAN







SummarizedBenchmark

Run revdepcheck::cloud_details(, "SummarizedBenchmark") for more info

Error before installation

Devel







CRAN







supersigs

Run revdepcheck::cloud_details(, "supersigs") for more info

Error before installation

Devel







CRAN







svaNUMT

Run revdepcheck::cloud_details(, "svaNUMT") for more info

Error before installation

Devel







CRAN







svaRetro

Run revdepcheck::cloud_details(, "svaRetro") for more info

Error before installation

Devel







CRAN







syntenet

Run revdepcheck::cloud_details(, "syntenet") for more info

Error before installation

Devel







CRAN







systemPipeShiny

Run revdepcheck::cloud_details(, "systemPipeShiny") for more info

Error before installation

Devel







CRAN







tadar

Run revdepcheck::cloud_details(, "tadar") for more info

Error before installation

Devel







CRAN







TBSignatureProfiler

Run revdepcheck::cloud_details(, "TBSignatureProfiler") for more info

Error before installation

Devel







CRAN







tidybulk

Run revdepcheck::cloud_details(, "tidybulk") for more info

Error before installation

Devel







CRAN







tidySingleCellExperiment

Run revdepcheck::cloud_details(, "tidySingleCellExperiment") for more info

Error before installation

Devel







CRAN







tidySummarizedExperiment

Run revdepcheck::cloud_details(, "tidySummarizedExperiment") for more info

Error before installation

Devel







CRAN







treeio

Run revdepcheck::cloud_details(, "treeio") for more info

Error before installation

Devel







CRAN







TreeSummarizedExperiment

Run revdepcheck::cloud_details(, "TreeSummarizedExperiment") for more info

Error before installation

Devel







CRAN







triptych

Run revdepcheck::cloud_details(, "triptych") for more info

In both

Installation

Devel

* installing *source* package ‘triptych’ ...
** package ‘triptych’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
Error: C++20 standard requested but CXX20 is not defined
* removing ‘/tmp/workdir/triptych/new/triptych.Rcheck/triptych’


CRAN

* installing *source* package ‘triptych’ ...
** package ‘triptych’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
Error: C++20 standard requested but CXX20 is not defined
* removing ‘/tmp/workdir/triptych/old/triptych.Rcheck/triptych’


tuberculosis

Run revdepcheck::cloud_details(, "tuberculosis") for more info

Error before installation

Devel







CRAN







UMI4Cats

Run revdepcheck::cloud_details(, "UMI4Cats") for more info

Error before installation

Devel







CRAN







universalmotif

Run revdepcheck::cloud_details(, "universalmotif") for more info

Error before installation

Devel







CRAN







variancePartition

Run revdepcheck::cloud_details(, "variancePartition") for more info

Error before installation

Devel







CRAN







Voyager

Run revdepcheck::cloud_details(, "Voyager") for more info

Error before installation

Devel







CRAN







weitrix

Run revdepcheck::cloud_details(, "weitrix") for more info

Error before installation

Devel







CRAN







wpm

Run revdepcheck::cloud_details(, "wpm") for more info

Error before installation

Devel







CRAN







wppi

Run revdepcheck::cloud_details(, "wppi") for more info

Error before installation

Devel







CRAN









tidyverse/rlang documentation built on Oct. 31, 2024, 5:35 p.m.