Run revdepcheck::cloud_details(, "aggregateBioVar")
for more info
Run revdepcheck::cloud_details(, "airpart")
for more info
Run revdepcheck::cloud_details(, "alevinQC")
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Run revdepcheck::cloud_details(, "AlpsNMR")
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Run revdepcheck::cloud_details(, "AnVIL")
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Run revdepcheck::cloud_details(, "APL")
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Run revdepcheck::cloud_details(, "ArrayExpress")
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Run revdepcheck::cloud_details(, "bandle")
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Run revdepcheck::cloud_details(, "bayesdfa")
for more info
Installation failed.
See ‘/tmp/workdir/bayesdfa/new/bayesdfa.Rcheck/00install.out’ for details.
* installing *source* package ‘bayesdfa’ ...
** package ‘bayesdfa’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’
using C++17
g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:397,
...
/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::operator const Scalar() const [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Option = 0; Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::Scalar = double]’
/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric<Model, BaseRNG>::T(stan::mcmc::dense_e_point&) [with Model = model_dfa_namespace::model_dfa; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here
/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__vector(2) double’} [-Wignored-attributes]
g++: fatal error: Killed signal terminated program cc1plus
compilation terminated.
make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_dfa.o] Error 1
ERROR: compilation failed for package ‘bayesdfa’
* removing ‘/tmp/workdir/bayesdfa/new/bayesdfa.Rcheck/bayesdfa’
* installing *source* package ‘bayesdfa’ ...
** package ‘bayesdfa’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’
using C++17
g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:397,
...
/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::operator const Scalar() const [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Option = 0; Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::Scalar = double]’
/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric<Model, BaseRNG>::T(stan::mcmc::dense_e_point&) [with Model = model_dfa_namespace::model_dfa; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here
/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__vector(2) double’} [-Wignored-attributes]
g++: fatal error: Killed signal terminated program cc1plus
compilation terminated.
make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_dfa.o] Error 1
ERROR: compilation failed for package ‘bayesdfa’
* removing ‘/tmp/workdir/bayesdfa/old/bayesdfa.Rcheck/bayesdfa’
Run revdepcheck::cloud_details(, "benchmarkfdrData2019")
for more info
Run revdepcheck::cloud_details(, "BindingSiteFinder")
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Run revdepcheck::cloud_details(, "BiocBook")
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Run revdepcheck::cloud_details(, "BiocPkgTools")
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Run revdepcheck::cloud_details(, "BioNERO")
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Run revdepcheck::cloud_details(, "cbpManager")
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Run revdepcheck::cloud_details(, "celaref")
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Run revdepcheck::cloud_details(, "CellaRepertorium")
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Run revdepcheck::cloud_details(, "censcyt")
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Run revdepcheck::cloud_details(, "Cepo")
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Run revdepcheck::cloud_details(, "cfdnakit")
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Run revdepcheck::cloud_details(, "cfDNAPro")
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Run revdepcheck::cloud_details(, "circRNAprofiler")
for more info
Run revdepcheck::cloud_details(, "CircSeqAlignTk")
for more info
Run revdepcheck::cloud_details(, "CiteFuse")
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Run revdepcheck::cloud_details(, "ClassifyR")
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Run revdepcheck::cloud_details(, "clusterProfiler")
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Run revdepcheck::cloud_details(, "clustifyr")
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Run revdepcheck::cloud_details(, "cogeqc")
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Run revdepcheck::cloud_details(, "comapr")
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Run revdepcheck::cloud_details(, "COMPASS")
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Run revdepcheck::cloud_details(, "ComPrAn")
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Run revdepcheck::cloud_details(, "concordexR")
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Run revdepcheck::cloud_details(, "CoreGx")
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Run revdepcheck::cloud_details(, "cosmosR")
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Run revdepcheck::cloud_details(, "COTAN")
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Run revdepcheck::cloud_details(, "crisprVerse")
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Run revdepcheck::cloud_details(, "cTRAP")
for more info
Run revdepcheck::cloud_details(, "CuratedAtlasQueryR")
for more info
Run revdepcheck::cloud_details(, "curatedMetagenomicData")
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Run revdepcheck::cloud_details(, "curatedTBData")
for more info
Run revdepcheck::cloud_details(, "CyTOFpower")
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Run revdepcheck::cloud_details(, "CytoGLMM")
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Run revdepcheck::cloud_details(, "cytoKernel")
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Run revdepcheck::cloud_details(, "CytoPipeline")
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Run revdepcheck::cloud_details(, "dce")
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Run revdepcheck::cloud_details(, "dearseq")
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Run revdepcheck::cloud_details(, "decoupleR")
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Run revdepcheck::cloud_details(, "DEGreport")
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Run revdepcheck::cloud_details(, "DIAlignR")
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Run revdepcheck::cloud_details(, "dStruct")
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Run revdepcheck::cloud_details(, "easier")
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Run revdepcheck::cloud_details(, "easyalluvial")
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Run revdepcheck::cloud_details(, "easyreporting")
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Run revdepcheck::cloud_details(, "enrichplot")
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Run revdepcheck::cloud_details(, "EpiMix")
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Run revdepcheck::cloud_details(, "escape")
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Run revdepcheck::cloud_details(, "escheR")
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Run revdepcheck::cloud_details(, "evaluator")
for more info
Run revdepcheck::cloud_details(, "extraChIPs")
for more info
Run revdepcheck::cloud_details(, "factR")
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Run revdepcheck::cloud_details(, "fenr")
for more info
Run revdepcheck::cloud_details(, "FindIT2")
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Run revdepcheck::cloud_details(, "flowGate")
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Run revdepcheck::cloud_details(, "FlowSOM")
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Run revdepcheck::cloud_details(, "flowTime")
for more info
Run revdepcheck::cloud_details(, "gemma.R")
for more info
Run revdepcheck::cloud_details(, "genekitr")
for more info
* using log directory ‘/tmp/workdir/genekitr/new/genekitr.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘genekitr/DESCRIPTION’ ... OK
...
* this is package ‘genekitr’ version ‘1.2.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘clusterProfiler’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/genekitr/old/genekitr.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘genekitr/DESCRIPTION’ ... OK
...
* this is package ‘genekitr’ version ‘1.2.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘clusterProfiler’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
Run revdepcheck::cloud_details(, "GeneTonic")
for more info
Run revdepcheck::cloud_details(, "GenomicDataCommons")
for more info
Run revdepcheck::cloud_details(, "GeomxTools")
for more info
Run revdepcheck::cloud_details(, "gg4way")
for more info
Run revdepcheck::cloud_details(, "ggbio")
for more info
Run revdepcheck::cloud_details(, "ggcyto")
for more info
Run revdepcheck::cloud_details(, "ggmanh")
for more info
Run revdepcheck::cloud_details(, "ggsc")
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Run revdepcheck::cloud_details(, "ggtree")
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Run revdepcheck::cloud_details(, "ggtreeExtra")
for more info
Run revdepcheck::cloud_details(, "glmGamPoi")
for more info
Run revdepcheck::cloud_details(, "GloScope")
for more info
Run revdepcheck::cloud_details(, "GOSemSim")
for more info
Run revdepcheck::cloud_details(, "grandR")
for more info
* using log directory ‘/tmp/workdir/grandR/new/grandR.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘grandR/DESCRIPTION’ ... OK
...
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
‘getting-started.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 2 NOTEs
* using log directory ‘/tmp/workdir/grandR/old/grandR.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘grandR/DESCRIPTION’ ... OK
...
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
‘getting-started.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 2 NOTEs
Run revdepcheck::cloud_details(, "GRaNIE")
for more info
Run revdepcheck::cloud_details(, "granulator")
for more info
Run revdepcheck::cloud_details(, "graphite")
for more info
Run revdepcheck::cloud_details(, "GSEAmining")
for more info
Run revdepcheck::cloud_details(, "GUIDEseq")
for more info
Run revdepcheck::cloud_details(, "HCAExplorer")
for more info
Run revdepcheck::cloud_details(, "hermes")
for more info
Run revdepcheck::cloud_details(, "HiCDCPlus")
for more info
Run revdepcheck::cloud_details(, "HIPPO")
for more info
Run revdepcheck::cloud_details(, "hoodscanR")
for more info
Run revdepcheck::cloud_details(, "hypeR")
for more info
Run revdepcheck::cloud_details(, "iCNV")
for more info
Run revdepcheck::cloud_details(, "ideal")
for more info
Run revdepcheck::cloud_details(, "idpr")
for more info
Run revdepcheck::cloud_details(, "immcp")
for more info
* using log directory ‘/tmp/workdir/immcp/new/immcp.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘immcp/DESCRIPTION’ ... OK
...
* this is package ‘immcp’ version ‘1.0.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'clusterProfiler', 'DOSE'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/immcp/old/immcp.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘immcp/DESCRIPTION’ ... OK
...
* this is package ‘immcp’ version ‘1.0.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'clusterProfiler', 'DOSE'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
Run revdepcheck::cloud_details(, "immunotation")
for more info
Run revdepcheck::cloud_details(, "InterCellar")
for more info
Run revdepcheck::cloud_details(, "IntOMICS")
for more info
Run revdepcheck::cloud_details(, "ISAnalytics")
for more info
Run revdepcheck::cloud_details(, "isomiRs")
for more info
Run revdepcheck::cloud_details(, "isoreader")
for more info
Run revdepcheck::cloud_details(, "jsontools")
for more info
Run revdepcheck::cloud_details(, "katdetectr")
for more info
Run revdepcheck::cloud_details(, "ldblock")
for more info
Run revdepcheck::cloud_details(, "lipidr")
for more info
Run revdepcheck::cloud_details(, "loon.ggplot")
for more info
* using log directory ‘/tmp/workdir/loon.ggplot/new/loon.ggplot.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘loon.ggplot/DESCRIPTION’ ... OK
...
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘loon’
Package suggested but not available for checking: ‘zenplots’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/loon.ggplot/old/loon.ggplot.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘loon.ggplot/DESCRIPTION’ ... OK
...
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘loon’
Package suggested but not available for checking: ‘zenplots’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
Run revdepcheck::cloud_details(, "mariner")
for more info
Run revdepcheck::cloud_details(, "marr")
for more info
Run revdepcheck::cloud_details(, "MatrixQCvis")
for more info
Run revdepcheck::cloud_details(, "memes")
for more info
Run revdepcheck::cloud_details(, "metabCombiner")
for more info
Run revdepcheck::cloud_details(, "MetaScope")
for more info
Run revdepcheck::cloud_details(, "MethReg")
for more info
Run revdepcheck::cloud_details(, "MetNet")
for more info
Run revdepcheck::cloud_details(, "mia")
for more info
Run revdepcheck::cloud_details(, "miaViz")
for more info
Run revdepcheck::cloud_details(, "microbiomeExplorer")
for more info
Run revdepcheck::cloud_details(, "microbiomeMarker")
for more info
Run revdepcheck::cloud_details(, "MicrobiotaProcess")
for more info
Run revdepcheck::cloud_details(, "microSTASIS")
for more info
Run revdepcheck::cloud_details(, "midasHLA")
for more info
Run revdepcheck::cloud_details(, "mistyR")
for more info
Run revdepcheck::cloud_details(, "MoleculeExperiment")
for more info
Run revdepcheck::cloud_details(, "MOMA")
for more info
Run revdepcheck::cloud_details(, "MOSim")
for more info
Run revdepcheck::cloud_details(, "MQmetrics")
for more info
Run revdepcheck::cloud_details(, "MSA2dist")
for more info
Run revdepcheck::cloud_details(, "MSnID")
for more info
Run revdepcheck::cloud_details(, "MSPrep")
for more info
Run revdepcheck::cloud_details(, "multiGSEA")
for more info
Run revdepcheck::cloud_details(, "MultiRNAflow")
for more info
Run revdepcheck::cloud_details(, "musicatk")
for more info
Run revdepcheck::cloud_details(, "NanoMethViz")
for more info
Run revdepcheck::cloud_details(, "NanoporeRNASeq")
for more info
Run revdepcheck::cloud_details(, "nanotatoR")
for more info
Run revdepcheck::cloud_details(, "NanoTube")
for more info
Run revdepcheck::cloud_details(, "nearBynding")
for more info
Run revdepcheck::cloud_details(, "ngsReports")
for more info
Run revdepcheck::cloud_details(, "nipalsMCIA")
for more info
Run revdepcheck::cloud_details(, "NPARC")
for more info
Run revdepcheck::cloud_details(, "nullranges")
for more info
Run revdepcheck::cloud_details(, "OlinkAnalyze")
for more info
* using log directory ‘/tmp/workdir/OlinkAnalyze/new/OlinkAnalyze.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘OlinkAnalyze/DESCRIPTION’ ... OK
...
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
‘OutlierExclusion.Rmd’ using ‘UTF-8’... OK
‘Vignett.Rmd’ using ‘UTF-8’... OK
‘bridging_introduction.Rmd’ using ‘UTF-8’... OK
‘plate_randomizer.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 1 NOTE
* using log directory ‘/tmp/workdir/OlinkAnalyze/old/OlinkAnalyze.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘OlinkAnalyze/DESCRIPTION’ ... OK
...
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
‘OutlierExclusion.Rmd’ using ‘UTF-8’... OK
‘Vignett.Rmd’ using ‘UTF-8’... OK
‘bridging_introduction.Rmd’ using ‘UTF-8’... OK
‘plate_randomizer.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 1 NOTE
Run revdepcheck::cloud_details(, "OmnipathR")
for more info
Run revdepcheck::cloud_details(, "optimalFlow")
for more info
Run revdepcheck::cloud_details(, "Organism.dplyr")
for more info
Run revdepcheck::cloud_details(, "orthos")
for more info
Run revdepcheck::cloud_details(, "PanomiR")
for more info
Run revdepcheck::cloud_details(, "PanViz")
for more info
Run revdepcheck::cloud_details(, "pareg")
for more info
Run revdepcheck::cloud_details(, "PAST")
for more info
Run revdepcheck::cloud_details(, "PDATK")
for more info
Run revdepcheck::cloud_details(, "PhosR")
for more info
Run revdepcheck::cloud_details(, "plotgardener")
for more info
Run revdepcheck::cloud_details(, "plotGrouper")
for more info
Run revdepcheck::cloud_details(, "plyinteractions")
for more info
Run revdepcheck::cloud_details(, "plyranges")
for more info
Run revdepcheck::cloud_details(, "pmdplyr")
for more info
Run revdepcheck::cloud_details(, "ppcseq")
for more info
Run revdepcheck::cloud_details(, "proActiv")
for more info
Run revdepcheck::cloud_details(, "profileplyr")
for more info
Run revdepcheck::cloud_details(, "ProteoDisco")
for more info
Run revdepcheck::cloud_details(, "protGear")
for more info
Run revdepcheck::cloud_details(, "ptairMS")
for more info
Run revdepcheck::cloud_details(, "qckitfastq")
for more info
Run revdepcheck::cloud_details(, "qmtools")
for more info
Run revdepcheck::cloud_details(, "qPLEXanalyzer")
for more info
Run revdepcheck::cloud_details(, "QTLExperiment")
for more info
Run revdepcheck::cloud_details(, "quantiseqr")
for more info
Run revdepcheck::cloud_details(, "RAIDS")
for more info
Run revdepcheck::cloud_details(, "Rcpi")
for more info
Run revdepcheck::cloud_details(, "ReactomeGraph4R")
for more info
Run revdepcheck::cloud_details(, "restfulSE")
for more info
Run revdepcheck::cloud_details(, "RiboCrypt")
for more info
Run revdepcheck::cloud_details(, "ribor")
for more info
Run revdepcheck::cloud_details(, "rifi")
for more info
Run revdepcheck::cloud_details(, "rifiComparative")
for more info
Run revdepcheck::cloud_details(, "RNAseqCovarImpute")
for more info
Run revdepcheck::cloud_details(, "RVA")
for more info
* using log directory ‘/tmp/workdir/RVA/new/RVA.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘RVA/DESCRIPTION’ ... OK
...
* this is package ‘RVA’ version ‘0.0.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘clusterProfiler’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/RVA/old/RVA.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘RVA/DESCRIPTION’ ... OK
...
* this is package ‘RVA’ version ‘0.0.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘clusterProfiler’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
Run revdepcheck::cloud_details(, "scater")
for more info
Run revdepcheck::cloud_details(, "sccomp")
for more info
Run revdepcheck::cloud_details(, "scFeatureFilter")
for more info
Run revdepcheck::cloud_details(, "scider")
for more info
Run revdepcheck::cloud_details(, "scifer")
for more info
Run revdepcheck::cloud_details(, "scPipe")
for more info
Run revdepcheck::cloud_details(, "SCpubr")
for more info
* using log directory ‘/tmp/workdir/SCpubr/new/SCpubr.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘SCpubr/DESCRIPTION’ ... OK
...
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... OK
Running ‘testthat.R’
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
‘reference_manual.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 1 NOTE
* using log directory ‘/tmp/workdir/SCpubr/old/SCpubr.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘SCpubr/DESCRIPTION’ ... OK
...
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... OK
Running ‘testthat.R’
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
‘reference_manual.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 1 NOTE
Run revdepcheck::cloud_details(, "ScreenR")
for more info
Run revdepcheck::cloud_details(, "scRepertoire")
for more info
Run revdepcheck::cloud_details(, "seqCAT")
for more info
Run revdepcheck::cloud_details(, "shinyepico")
for more info
Run revdepcheck::cloud_details(, "single")
for more info
Run revdepcheck::cloud_details(, "singleCellTK")
for more info
Run revdepcheck::cloud_details(, "snapcount")
for more info
Run revdepcheck::cloud_details(, "SpatialCPie")
for more info
Run revdepcheck::cloud_details(, "SpatialFeatureExperiment")
for more info
Run revdepcheck::cloud_details(, "SPIAT")
for more info
Run revdepcheck::cloud_details(, "spicyR")
for more info
Run revdepcheck::cloud_details(, "splatter")
for more info
Run revdepcheck::cloud_details(, "SpotClean")
for more info
Run revdepcheck::cloud_details(, "sSNAPPY")
for more info
Run revdepcheck::cloud_details(, "standR")
for more info
Run revdepcheck::cloud_details(, "StructuralVariantAnnotation")
for more info
Run revdepcheck::cloud_details(, "SummarizedBenchmark")
for more info
Run revdepcheck::cloud_details(, "supersigs")
for more info
Run revdepcheck::cloud_details(, "svaNUMT")
for more info
Run revdepcheck::cloud_details(, "svaRetro")
for more info
Run revdepcheck::cloud_details(, "syntenet")
for more info
Run revdepcheck::cloud_details(, "systemPipeShiny")
for more info
Run revdepcheck::cloud_details(, "tadar")
for more info
Run revdepcheck::cloud_details(, "TBSignatureProfiler")
for more info
Run revdepcheck::cloud_details(, "tidybulk")
for more info
Run revdepcheck::cloud_details(, "tidySingleCellExperiment")
for more info
Run revdepcheck::cloud_details(, "tidySummarizedExperiment")
for more info
Run revdepcheck::cloud_details(, "treeio")
for more info
Run revdepcheck::cloud_details(, "TreeSummarizedExperiment")
for more info
Run revdepcheck::cloud_details(, "triptych")
for more info
Installation failed.
See ‘/tmp/workdir/triptych/new/triptych.Rcheck/00install.out’ for details.
* installing *source* package ‘triptych’ ...
** package ‘triptych’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
Error: C++20 standard requested but CXX20 is not defined
* removing ‘/tmp/workdir/triptych/new/triptych.Rcheck/triptych’
* installing *source* package ‘triptych’ ...
** package ‘triptych’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
Error: C++20 standard requested but CXX20 is not defined
* removing ‘/tmp/workdir/triptych/old/triptych.Rcheck/triptych’
Run revdepcheck::cloud_details(, "tuberculosis")
for more info
Run revdepcheck::cloud_details(, "UMI4Cats")
for more info
Run revdepcheck::cloud_details(, "universalmotif")
for more info
Run revdepcheck::cloud_details(, "variancePartition")
for more info
Run revdepcheck::cloud_details(, "Voyager")
for more info
Run revdepcheck::cloud_details(, "weitrix")
for more info
Run revdepcheck::cloud_details(, "wpm")
for more info
Run revdepcheck::cloud_details(, "wppi")
for more info
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