simulateSoilCore: Simulate a sediment core from a set of cohorts

In tilbud/rCTM: R-Cohort Marsh Equilibrium Model

Simulate a sediment core from a set of cohorts

Description

Simulate a sediment core from a set of cohorts

Usage

simulateSoilCore(
  cohorts,
  coreYear,
  coreDepth = 100,
  coreMaxs = 1:coreDepth,
  coreMins = coreMaxs - 1,
  omToOcParams = list(B0 = 0, B1 = 0.48),
  omPackingDensity = 0.085,
  mineralPackingDensity = 1.99,
  rootPackingDensity = omPackingDensity
)

Arguments

cohorts	a data frame, output from runCohortMem, tracking mineral and organic mass cohorts over each year of the simulation
coreYear	an integer, year in form YYYY, specify a year to simulate taking a sediment core
coreDepth	an integer, depth, specify a depth to simulate coring to and assume 1 cm sampling intervals
coreMaxs	a vector of sampling depth maximums to simulate coring subsamples, this is an alternative to depth, and 1cm increments
coreMins	a vector of sampling depth minimums to simulate coring subsamples, this is an alternative to depth, and 1cm increments
omToOcParams	a list of parameters defining a linear or quadratic relationship between fraction organic matter and fraction carbon
omPackingDensity	a numeric, the bulk density of pure organic matter
mineralPackingDensity	a numeric, the bulk density of pure mineral matter
rootPackingDensity	a numeric, the bulk density of pure root matter

Value

a dataframe with variables simulated from a soil core

tilbud/rCTM documentation built on March 30, 2024, 10:06 a.m.