add_LRR_BAF_to_oncosnp_cnv: Add the LRR and BAF to each segment reported in a OncoSNP CNV...
In tinyheero/oncosnputils: Post-processing of OncoSNP Results
Description
Usage
Arguments
Value
Description
Add the LRR and BAF to each segment reported in a OncoSNP CNV file.
Usage
1
add_LRR_BAF_to_oncosnp_cnv(cnvDt, qcDt, probeDt)
Arguments
cnvDt
The OncoSNP standard file (.cnvs) data.table loaded using the
loadOncosnpCnvFile() function.
qcDt
The OncoSNP quality control (.qc) data.table loaded using the
LoadOncosnpQcFile() function.
probeDt
The PennCNV probe data file data.table loaded using the
LoadPennCNVProbeData() function.
Value
A modified data.frame of the cnvDt that contains extra columns for
LRR, LRRShifted, BAF, etc.
tinyheero/oncosnputils documentation built on May 31, 2019, 3:36 p.m.
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Description Usage Arguments Value
Description
Add the LRR and BAF to each segment reported in a OncoSNP CNV file.
Usage
1 | add_LRR_BAF_to_oncosnp_cnv(cnvDt, qcDt, probeDt)
|
Arguments
cnvDt |
The OncoSNP standard file (.cnvs) data.table loaded using the loadOncosnpCnvFile() function. |
qcDt |
The OncoSNP quality control (.qc) data.table loaded using the LoadOncosnpQcFile() function. |
probeDt |
The PennCNV probe data file data.table loaded using the LoadPennCNVProbeData() function. |
Value
A modified data.frame of the cnvDt that contains extra columns for LRR, LRRShifted, BAF, etc.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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