Description Usage Arguments Value
Add the LRR and BAF to each segment reported in a OncoSNP CNV file.
1 | add_LRR_BAF_to_oncosnp_cnv(cnvDt, qcDt, probeDt)
|
cnvDt |
The OncoSNP standard file (.cnvs) data.table loaded using the loadOncosnpCnvFile() function. |
qcDt |
The OncoSNP quality control (.qc) data.table loaded using the LoadOncosnpQcFile() function. |
probeDt |
The PennCNV probe data file data.table loaded using the LoadPennCNVProbeData() function. |
A modified data.frame of the cnvDt that contains extra columns for LRR, LRRShifted, BAF, etc.
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