add_LRR_BAF_to_oncosnp_cnv: Add the LRR and BAF to each segment reported in a OncoSNP CNV...

Description Usage Arguments Value

View source: R/add_LRR_BAF_to_oncosnp_cnv.R

Description

Add the LRR and BAF to each segment reported in a OncoSNP CNV file.

Usage

1
add_LRR_BAF_to_oncosnp_cnv(cnvDt, qcDt, probeDt)

Arguments

cnvDt

The OncoSNP standard file (.cnvs) data.table loaded using the loadOncosnpCnvFile() function.

qcDt

The OncoSNP quality control (.qc) data.table loaded using the LoadOncosnpQcFile() function.

probeDt

The PennCNV probe data file data.table loaded using the LoadPennCNVProbeData() function.

Value

A modified data.frame of the cnvDt that contains extra columns for LRR, LRRShifted, BAF, etc.


tinyheero/oncosnputils documentation built on July 9, 2017, 9:37 a.m.