load_cnv: Load dataframe with Gistic2 thresholded CNV data

In tjbencomo/TBmisc: Miscellaneous functions for working with biomedical data

Description

Load dataframe with Gistic2 thresholded CNV data

Usage

load_cnv(cancer, data.dir, genes = NULL, file = NULL)

Arguments

cancer	TCGA study (use acronym i.e. SKCM)
data.dir	Directory where the data files are stored
genes	Genes to include in dataframe. NULL loads all genes
file	Filename of the file containing CNV data

Value

Dataframe where each row is one sample and each column is the Gistic2 score for that gene

tjbencomo/TBmisc documentation built on May 16, 2019, 4:10 a.m.