load_cohorts: Load multiple TCGA studies at once
In tjbencomo/TBmisc: Miscellaneous functions for working with biomedical data
Description
Usage
Arguments
Value
Description
Load multiple TCGA studies at once
Usage
1
load_cohorts(cancers, data.dir, genes)
Arguments
cancers
TCGA studies (use acronym i.e. SKCM)
data.dir
Directory where the data files are stored
genes
Genes to include in dataframe. NULL loads all genes
Value
Dataframe where rows are patients and columns include clinical, rnaseq, and
cnv data. The 'cohort“ column contains the TCGA study each patient belongs to.
tjbencomo/TBmisc documentation built on May 16, 2019, 4:10 a.m.
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Description Usage Arguments Value
Description
Load multiple TCGA studies at once
Usage
1 | load_cohorts(cancers, data.dir, genes)
|
Arguments
cancers |
TCGA studies (use acronym i.e. SKCM) |
data.dir |
Directory where the data files are stored |
genes |
Genes to include in dataframe. NULL loads all genes |
Value
Dataframe where rows are patients and columns include clinical, rnaseq, and cnv data. The 'cohort“ column contains the TCGA study each patient belongs to.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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