Files in tjmckinley/SimBIID
Simulation-Based Inference Methods for Infectious Disease Models
.Rbuildignore
.github/workflows/rhub.yaml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/ABCRef.R
R/ABCSMC.R
R/PMCMC.R
R/RcppExports.R
R/Rcpp_mparse.R
R/SimBIID-package.R
R/bisectTols.R
R/bootStates.R
R/checkInputs.R
R/compileRcpp.R
R/data.R
R/mparse.R
R/mparseRcpp.R
R/plotABC.R
R/plotPMCMC.R
R/plotSimBIID_runs.R
R/predictPMCMC.R
R/printABC.R
R/printPMCMC.R
R/printSimBIID_model.R
R/printSimBIID_runs.R
R/run.R
R/runProp.R
R/runRef.R
R/summaryABC.R
R/summaryPMCMC.R
R/windowPMCMC.R
R/zzz.R
README.md
SimBIID.Rproj
cran-comments.md
data/ebola.rda
data/smallpox.rda
inst/simFunction.R
man/ABCRef.Rd
man/ABCSMC.Rd
man/PMCMC.Rd
man/SimBIID.Rd
man/compileRcpp.Rd
man/ebola.Rd
man/mparseRcpp.Rd
man/plot.ABCSMC.Rd
man/plot.PMCMC.Rd
man/plot.SimBIID_runs.Rd
man/predict.PMCMC.Rd
man/print.ABCSMC.Rd
man/print.PMCMC.Rd
man/print.SimBIID_model.Rd
man/print.SimBIID_runs.Rd
man/run.Rd
man/smallpox.Rd
man/summary.ABCSMC.Rd
man/summary.PMCMC.Rd
man/window.PMCMC.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/adaptUpdate.cpp
src/bootstrapParticleFilter.cpp
src/bootstrapParticleFilterState.cpp
src/cholArma.cpp
src/functions.h
src/mvrnormArma.cpp
src/pmcmc.cpp
tests/testthat.R
tests/testthat/_snaps/ABCRef.md
tests/testthat/_snaps/ABCSMC.md
tests/testthat/_snaps/PMCMC.md
tests/testthat/_snaps/run.md
tests/testthat/test-ABCRef.R
tests/testthat/test-ABCSMC.R
tests/testthat/test-PMCMC.R
tests/testthat/test-run.R
