Files in tjmckinley/SimBIID
Simulation-Based Inference Methods for Infectious Disease Models

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/ABCRef.R R/ABCSMC.R R/PMCMC.R R/RcppExports.R R/Rcpp_mparse.R R/SimBIID-package.R R/bisectTols.R R/bootStates.R R/checkInputs.R R/compileRcpp.R R/data.R R/mparse.R R/mparseRcpp.R R/plotABC.R R/plotPMCMC.R R/plotSimBIID_runs.R R/predictPMCMC.R R/printABC.R R/printPMCMC.R R/printSimBIID_model.R R/printSimBIID_runs.R R/run.R R/runProp.R R/runRef.R R/summaryABC.R R/summaryPMCMC.R R/windowPMCMC.R R/zzz.R README.md
SimBIID.Rproj
cran-comments.md
data/ebola.rda
data/smallpox.rda
inst/simFunction.R man/ABCRef.Rd man/ABCSMC.Rd man/PMCMC.Rd man/SimBIID-package.Rd man/compileRcpp.Rd man/ebola.Rd man/mparseRcpp.Rd man/plot.ABCSMC.Rd man/plot.PMCMC.Rd man/plot.SimBIID_runs.Rd man/predict.PMCMC.Rd man/print.ABCSMC.Rd man/print.PMCMC.Rd man/print.SimBIID_model.Rd man/print.SimBIID_runs.Rd man/run.Rd man/smallpox.Rd man/summary.ABCSMC.Rd man/summary.PMCMC.Rd man/window.PMCMC.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/adaptUpdate.cpp
src/bootstrapParticleFilter.cpp
src/bootstrapParticleFilterState.cpp
src/cholArma.cpp
src/functions.h
src/mvrnormArma.cpp
src/pmcmc.cpp
tests/testthat.R
tests/testthat/ABCRef
tests/testthat/ABCRef1
tests/testthat/ABCSMC
tests/testthat/ABCSMC1
tests/testthat/ABCSMCsum
tests/testthat/ABCSMCtol
tests/testthat/ABCSMCtol1
tests/testthat/ABCSMCtol2
tests/testthat/PMCMC
tests/testthat/PMCMCpred
tests/testthat/mparse
tests/testthat/mparseinc
tests/testthat/mparseinctspan
tests/testthat/mparsetspan
tests/testthat/run
tests/testthat/runinc
tests/testthat/runinctspan
tests/testthat/runtspan
tests/testthat/test-ABCRef.R tests/testthat/test-ABCSMC.R tests/testthat/test-PMCMC.R tests/testthat/test-run.R
tjmckinley/SimBIID documentation built on May 25, 2020, 11:39 a.m.