Files in tmcd82070/CAMP_RST
CAMP RST R Routines
.Rbuildignore
.Renviron
.gitattributes
.gitignore
DESCRIPTION
NAMESPACE
R/F.lifestage.passage.forkLength.R
R/GlobalVars.r
R/all_catch_table.r
R/annualizeCovars.R
R/assignLSCompare.R
R/assignLifeStage.R
R/assign_1dim.r
R/assign_2dim.r
R/assign_batch_date.r
R/backEnhFit.r
R/bootstrap_passage.r
R/buildAstroStats.r
R/build_Report_Criteria.r
R/build_Report_Criteria_Release.r
R/by_catch_table.r
R/campR.r
R/capwords.r
R/catch_model.r
R/checkMissingCovars.r
R/checkValidCovars.r
R/chinook_by_date.r
R/chuck_zeros.R
R/covarPlot.r
R/eff_model.r
R/estCovar.R
R/est_catch.r
R/est_catch_trapN.r
R/est_efficiency.r
R/est_passage.r
R/expand_plus_counts.r
R/fitSpline.r
R/getCAMPEnvCov.R
R/getCatchDataWeight.R
R/getCatchForkLength.R
R/getTimeProp.r
R/getTogetherCovarData.r
R/get_all_catch_data.r
R/get_all_fish_data.r
R/get_by_catch.r
R/get_catch_data.r
R/get_indiv_fish_data.r
R/get_release_data.r
R/get_release_data_light.r
R/length_freq.r
R/makeFake_release.df.R
R/makeSkinnyTimes.r
R/max_buff_days.r
R/onAttach.r
R/overDphi.r
R/passageWithLifeStageAssign.R
R/percQ.R
R/plot.bs.spline.r
R/plot_catch_model.r
R/plot_eff_model.r
R/plot_lifestages.r
R/plot_passage.r
R/queryEnvCovAPI.R
R/reMap.R
R/reMap2.R
R/reclassifyLS.R
R/reduceETrials.r
R/release_summary.r
R/run_passage.r
R/run_sqlFile.r
R/size_by_date.r
R/sql_error_check.r
R/stepper.r
R/summarize_fish_visit.r
R/summarize_index.r
R/summarize_passage.r
R/summarize_releases.r
R/suppressBindingNotes.R
R/tableChecker.R
R/tableDeleter.R
R/tryEnvCovDB.R
R/weekly_effort.r
README.md
Rbatch.bat
camp_interface.csv
data/annual_records.rda
data/betas.rda
data/canal.rda
inst/enhEffCode/compiler.R
inst/enhEffCode/eff_model.enh.r
inst/enhEffCode/est_efficiency.enh.r
inst/enhEffCode/est_passage.enh.r
inst/enhEffCode/get_release_data.enh.r
inst/enhEffCode/passageWithLifeStageAssign.enh.R
inst/enhEffCode/run_passage.enh.r
inst/enhEffStats/1000_1001_fit.RData
inst/enhEffStats/1000_1001_splineBegD.RData
inst/enhEffStats/1000_1001_splineCoef.RData
inst/enhEffStats/1000_1001_splineDays.RData
inst/enhEffStats/1000_1001_splineEndD.RData
inst/enhEffStats/1000_1002_fit.RData
inst/enhEffStats/1000_1002_splineBegD.RData
inst/enhEffStats/1000_1002_splineCoef.RData
inst/enhEffStats/1000_1002_splineDays.RData
inst/enhEffStats/1000_1002_splineEndD.RData
inst/enhEffStats/1000_1003_fit.RData
inst/enhEffStats/1000_1003_splineBegD.RData
inst/enhEffStats/1000_1003_splineCoef.RData
inst/enhEffStats/1000_1003_splineDays.RData
inst/enhEffStats/1000_1003_splineEndD.RData
inst/enhEffStats/1000_1004_fit.RData
inst/enhEffStats/1000_1004_splineBegD.RData
inst/enhEffStats/1000_1004_splineCoef.RData
inst/enhEffStats/1000_1004_splineDays.RData
inst/enhEffStats/1000_1004_splineEndD.RData
inst/enhEffStats/1000_1005_fit.RData
inst/enhEffStats/1000_1005_splineBegD.RData
inst/enhEffStats/1000_1005_splineCoef.RData
inst/enhEffStats/1000_1005_splineDays.RData
inst/enhEffStats/1000_1005_splineEndD.RData
inst/enhEffStats/2000_2001_fit.RData
inst/enhEffStats/2000_2001_splineBegD.RData
inst/enhEffStats/2000_2001_splineCoef.RData
inst/enhEffStats/2000_2001_splineDays.RData
inst/enhEffStats/2000_2001_splineEndD.RData
inst/enhEffStats/2000_2004_fit.RData
inst/enhEffStats/2000_2004_splineBegD.RData
inst/enhEffStats/2000_2004_splineCoef.RData
inst/enhEffStats/2000_2004_splineDays.RData
inst/enhEffStats/2000_2004_splineEndD.RData
inst/enhEffStats/3000_3001_fit.RData
inst/enhEffStats/3000_3001_splineBegD.RData
inst/enhEffStats/3000_3001_splineCoef.RData
inst/enhEffStats/3000_3001_splineDays.RData
inst/enhEffStats/3000_3001_splineEndD.RData
inst/enhEffStats/3000_3002_fit.RData
inst/enhEffStats/3000_3002_splineBegD.RData
inst/enhEffStats/3000_3002_splineCoef.RData
inst/enhEffStats/3000_3002_splineDays.RData
inst/enhEffStats/3000_3002_splineEndD.RData
inst/enhEffStats/34000_34001_fit.RData
inst/enhEffStats/34000_34001_splineBegD.RData
inst/enhEffStats/34000_34001_splineCoef.RData
inst/enhEffStats/34000_34001_splineDays.RData
inst/enhEffStats/34000_34001_splineEndD.RData
inst/enhEffStats/4000_4001_fit.RData
inst/enhEffStats/4000_4001_splineBegD.RData
inst/enhEffStats/4000_4001_splineCoef.RData
inst/enhEffStats/4000_4001_splineDays.RData
inst/enhEffStats/4000_4001_splineEndD.RData
inst/enhEffStats/42000_42010_fit.RData
inst/enhEffStats/42000_42010_splineBegD.RData
inst/enhEffStats/42000_42010_splineCoef.RData
inst/enhEffStats/42000_42010_splineDays.RData
inst/enhEffStats/42000_42010_splineEndD.RData
inst/enhEffStats/42000_42020_fit.RData
inst/enhEffStats/42000_42020_splineBegD.RData
inst/enhEffStats/42000_42020_splineCoef.RData
inst/enhEffStats/42000_42020_splineDays.RData
inst/enhEffStats/42000_42020_splineEndD.RData
inst/enhEffStats/42000_42030_fit.RData
inst/enhEffStats/42000_42030_splineBegD.RData
inst/enhEffStats/42000_42030_splineCoef.RData
inst/enhEffStats/42000_42030_splineDays.RData
inst/enhEffStats/42000_42030_splineEndD.RData
inst/enhEffStats/42000_42040_fit.RData
inst/enhEffStats/42000_42040_splineBegD.RData
inst/enhEffStats/42000_42040_splineCoef.RData
inst/enhEffStats/42000_42040_splineDays.RData
inst/enhEffStats/42000_42040_splineEndD.RData
inst/enhEffStats/42000_42050_fit.RData
inst/enhEffStats/42000_42050_splineBegD.RData
inst/enhEffStats/42000_42050_splineCoef.RData
inst/enhEffStats/42000_42050_splineDays.RData
inst/enhEffStats/42000_42050_splineEndD.RData
inst/enhEffStats/42000_42055_fit.RData
inst/enhEffStats/42000_42055_splineBegD.RData
inst/enhEffStats/42000_42055_splineCoef.RData
inst/enhEffStats/42000_42055_splineDays.RData
inst/enhEffStats/42000_42055_splineEndD.RData
inst/enhEffStats/42000_42060_fit.RData
inst/enhEffStats/42000_42060_splineBegD.RData
inst/enhEffStats/42000_42060_splineCoef.RData
inst/enhEffStats/42000_42060_splineDays.RData
inst/enhEffStats/42000_42060_splineEndD.RData
inst/enhEffStats/42000_42065_fit.RData
inst/enhEffStats/42000_42065_splineBegD.RData
inst/enhEffStats/42000_42065_splineCoef.RData
inst/enhEffStats/42000_42065_splineDays.RData
inst/enhEffStats/42000_42065_splineEndD.RData
inst/enhEffStats/42000_42066_fit.RData
inst/enhEffStats/42000_42066_splineBegD.RData
inst/enhEffStats/42000_42066_splineCoef.RData
inst/enhEffStats/42000_42066_splineDays.RData
inst/enhEffStats/42000_42066_splineEndD.RData
inst/enhEffStats/42000_42070_fit.RData
inst/enhEffStats/42000_42070_splineBegD.RData
inst/enhEffStats/42000_42070_splineCoef.RData
inst/enhEffStats/42000_42070_splineDays.RData
inst/enhEffStats/42000_42070_splineEndD.RData
inst/enhEffStats/42000_42075_fit.RData
inst/enhEffStats/42000_42075_splineBegD.RData
inst/enhEffStats/42000_42075_splineCoef.RData
inst/enhEffStats/42000_42075_splineDays.RData
inst/enhEffStats/42000_42075_splineEndD.RData
inst/enhEffStats/42000_42080_fit.RData
inst/enhEffStats/42000_42080_splineBegD.RData
inst/enhEffStats/42000_42080_splineCoef.RData
inst/enhEffStats/42000_42080_splineDays.RData
inst/enhEffStats/42000_42080_splineEndD.RData
inst/enhEffStats/42000_42090_fit.RData
inst/enhEffStats/42000_42090_splineBegD.RData
inst/enhEffStats/42000_42090_splineCoef.RData
inst/enhEffStats/42000_42090_splineDays.RData
inst/enhEffStats/42000_42090_splineEndD.RData
inst/enhEffStats/42000_42100_fit.RData
inst/enhEffStats/42000_42100_splineBegD.RData
inst/enhEffStats/42000_42100_splineCoef.RData
inst/enhEffStats/42000_42100_splineDays.RData
inst/enhEffStats/42000_42100_splineEndD.RData
inst/enhEffStats/42000_42110_fit.RData
inst/enhEffStats/42000_42110_splineBegD.RData
inst/enhEffStats/42000_42110_splineCoef.RData
inst/enhEffStats/42000_42110_splineDays.RData
inst/enhEffStats/42000_42110_splineEndD.RData
inst/enhEffStats/5000_5001_fit.RData
inst/enhEffStats/5000_5001_splineBegD.RData
inst/enhEffStats/5000_5001_splineCoef.RData
inst/enhEffStats/5000_5001_splineDays.RData
inst/enhEffStats/5000_5001_splineEndD.RData
inst/enhEffStats/5000_5002_fit.RData
inst/enhEffStats/5000_5002_splineBegD.RData
inst/enhEffStats/5000_5002_splineCoef.RData
inst/enhEffStats/5000_5002_splineDays.RData
inst/enhEffStats/5000_5002_splineEndD.RData
inst/enhEffStats/5000_5003_fit.RData
inst/enhEffStats/5000_5003_splineBegD.RData
inst/enhEffStats/5000_5003_splineCoef.RData
inst/enhEffStats/5000_5003_splineDays.RData
inst/enhEffStats/5000_5003_splineEndD.RData
inst/enhEffStats/52000_52001_fit.RData
inst/enhEffStats/52000_52001_splineBegD.RData
inst/enhEffStats/52000_52001_splineCoef.RData
inst/enhEffStats/52000_52001_splineDays.RData
inst/enhEffStats/52000_52001_splineEndD.RData
inst/enhEffStats/52000_52002_fit.RData
inst/enhEffStats/52000_52002_splineBegD.RData
inst/enhEffStats/52000_52002_splineCoef.RData
inst/enhEffStats/52000_52002_splineDays.RData
inst/enhEffStats/52000_52002_splineEndD.RData
inst/enhEffStats/52000_52003_fit.RData
inst/enhEffStats/52000_52003_splineBegD.RData
inst/enhEffStats/52000_52003_splineCoef.RData
inst/enhEffStats/52000_52003_splineDays.RData
inst/enhEffStats/52000_52003_splineEndD.RData
inst/enhEffStats/52000_52004_fit.RData
inst/enhEffStats/52000_52004_splineBegD.RData
inst/enhEffStats/52000_52004_splineCoef.RData
inst/enhEffStats/52000_52004_splineDays.RData
inst/enhEffStats/52000_52004_splineEndD.RData
inst/enhEffStats/57000_57001_fit.RData
inst/enhEffStats/57000_57001_splineBegD.RData
inst/enhEffStats/57000_57001_splineCoef.RData
inst/enhEffStats/57000_57001_splineDays.RData
inst/enhEffStats/57000_57001_splineEndD.RData
inst/enhEffStats/57000_57002_fit.RData
inst/enhEffStats/57000_57002_splineBegD.RData
inst/enhEffStats/57000_57002_splineCoef.RData
inst/enhEffStats/57000_57002_splineDays.RData
inst/enhEffStats/57000_57002_splineEndD.RData
inst/enhEffStats/57000_57003_fit.RData
inst/enhEffStats/57000_57003_splineBegD.RData
inst/enhEffStats/57000_57003_splineCoef.RData
inst/enhEffStats/57000_57003_splineDays.RData
inst/enhEffStats/57000_57003_splineEndD.RData
inst/enhEffStats/57000_57004_fit.RData
inst/enhEffStats/57000_57004_splineBegD.RData
inst/enhEffStats/57000_57004_splineCoef.RData
inst/enhEffStats/57000_57004_splineDays.RData
inst/enhEffStats/57000_57004_splineEndD.RData
inst/enhEffStats/57000_57005_fit.RData
inst/enhEffStats/57000_57005_splineBegD.RData
inst/enhEffStats/57000_57005_splineCoef.RData
inst/enhEffStats/57000_57005_splineDays.RData
inst/enhEffStats/57000_57005_splineEndD.RData
inst/enhEffStats/6000_6002_fit.RData
inst/enhEffStats/6000_6002_splineBegD.RData
inst/enhEffStats/6000_6002_splineCoef.RData
inst/enhEffStats/6000_6002_splineDays.RData
inst/enhEffStats/6000_6002_splineEndD.RData
inst/enhEffStats/6000_6003_fit.RData
inst/enhEffStats/6000_6003_splineBegD.RData
inst/enhEffStats/6000_6003_splineCoef.RData
inst/enhEffStats/6000_6003_splineDays.RData
inst/enhEffStats/6000_6003_splineEndD.RData
inst/enhEffStats/varSummary_1000.RData
inst/enhEffStats/varSummary_2000.RData
inst/enhEffStats/varSummary_3000.RData
inst/enhEffStats/varSummary_34000.RData
inst/enhEffStats/varSummary_4000.RData
inst/enhEffStats/varSummary_42000.RData
inst/enhEffStats/varSummary_5000.RData
inst/enhEffStats/varSummary_52000.RData
inst/enhEffStats/varSummary_57000.RData
inst/enhEffStats/varSummary_6000.RData
inst/helperCode/Big_Looper2.0.r
inst/helperCode/EnhancedEffModelPlay.R
inst/helperCode/accounting.R
inst/helperCode/annual_passage.r
inst/helperCode/assign_gaplen.r
inst/helperCode/big_Looper.r
inst/helperCode/compileBigLoop2.0Results.R
inst/helperCode/compileBigLoopResults.r
inst/helperCode/compileBigLoopResultsAssignment.R
inst/helperCode/compileConfLimits.r
inst/helperCode/find_gaps.r
inst/helperCode/getRiverPassage.R
inst/helperCode/getTheData.r
inst/helperCode/get_indiv_visit_data.r
inst/helperCode/lifestage_passage.r
inst/helperCode/lifestage_passage_other.R
inst/helperCode/percQ.rnw
inst/helperCode/plot.spline.R
inst/helperCode/plot_spline.R
inst/sql/QryAllCatch.sql
inst/sql/QryBuildReportCriteria.sql
inst/sql/QryBuildReportCriteriaRelease.sql
inst/sql/QryByCatch.sql
inst/sql/QryCleanEnvCov.sql
inst/sql/QryEfficiencyTests.sql
inst/sql/QryFishingGaps.sql
inst/sql/QryNonValidFishing.sql
inst/sql/QryNotFishing.sql
inst/sql/QrySamplePeriod.sql
inst/sql/QrySumChinookByTrap.sql
inst/sql/QryUnmarkedByRunLifestage.sql
inst/sql/QryUnmarkedChinookLifeStages.sql
inst/sql/QryWeeklyEffort.sql
man/F.allCatch.table.Rd
man/F.assign.1dim.Rd
man/F.assign.2dim.Rd
man/F.assign.batch.date.Rd
man/F.bootstrap.passage.Rd
man/F.buildReportCriteria.Rd
man/F.buildReportCriteriaRelease.Rd
man/F.byCatch.table.Rd
man/F.catch.model.Rd
man/F.chinookByDate.table.Rd
man/F.efficiency.model.Rd
man/F.est.catch.Rd
man/F.est.catch.trapN.Rd
man/F.est.efficiency.Rd
man/F.est.passage.Rd
man/F.expand.plus.counts.Rd
man/F.get.all.catch.data.Rd
man/F.get.all.fish.data.Rd
man/F.get.catch.data.Rd
man/F.get.indiv.fish.data.Rd
man/F.get.release.data.Rd
man/F.get.release.data.light.Rd
man/F.getByCatch.Rd
man/F.length.frequency.Rd
man/F.lifestage.passage.forkLength.Rd
man/F.passageWithLifeStageAssign.Rd
man/F.plot.catch.model.Rd
man/F.plot.eff.model.Rd
man/F.plot.lifestages.Rd
man/F.plot.passage.Rd
man/F.reclassifyLS.Rd
man/F.release.summary.Rd
man/F.run.passage.Rd
man/F.run.sqlFile.Rd
man/F.size.by.date.Rd
man/F.sql.error.check.Rd
man/F.summarize.fish.visit.Rd
man/F.summarize.index.Rd
man/F.summarize.passage.Rd
man/F.summarize.releases.Rd
man/F.weekly.effort.Rd
man/GlobalVars.Rd
man/annual_records.Rd
man/annualizeCovars.Rd
man/assignLSCompare.Rd
man/assignLifeStage.Rd
man/backEnhFit.Rd
man/betas.Rd
man/buildAstroStats.Rd
man/campR.Rd
man/canal.Rd
man/capwords.Rd
man/checkMissingCovars.Rd
man/checkValidCovars.Rd
man/chuck.zeros.Rd
man/covarPlot.Rd
man/estCovar.Rd
man/fitSpline.Rd
man/getCAMPEnvCov.Rd
man/getCatchDataWeight.Rd
man/getCatchForkLenth.Rd
man/getTimeProp.Rd
man/getTogetherCovarData.Rd
man/makeFake_release.df.Rd
man/makeSkinnyTimes.Rd
man/max_buff_days.Rd
man/overDphi.Rd
man/percQ.Rd
man/plotbsSpline.Rd
man/queryEnvCovAPI.Rd
man/reMap.Rd
man/reMap2.Rd
man/reduceETrials.Rd
man/stepper.Rd
man/suppressBindingNotes.Rd
man/tableChecker.Rd
man/tableDeleter.Rd
man/tryEnvCovDB.Rd
run_R.r
vignettes/percQ.pdf
vignettes/percQ.pdf.asis
