tests/testthat/_snaps/dfuncVal_Hazrate.md

hazrate-MinimumInputs

Code
  summary(fit)
Output
  Call: dfuncEstim(data = sparrowDf, formula = dist ~
     groupsize(groupsize), likelihood = lhood)
  Coefficients:
               Estimate  SE          z          p(>|z|)     
  (Intercept)  3.852207  0.09954916  38.696528  0.000000e+00
  k            2.821023  0.32412762   8.703432  3.219955e-18

  Convergence: Success
  Function: HAZRATE  
  Strip: 0 [m] to 207 [m] 
  Effective strip width (ESW): 63.88362 [m] 
  Probability of detection: 0.3086165
  Scaling: g(0 [m]) = 1
  Log likelihood: -1665.103 
  AICc: 3334.241

       Surveyed Units: 36000 [m] 
     Individuals seen: 374 in 356 groups 
   Average group size: 1.050562 
     Group size range: 1 to 3 
  Density in sampled area: 8.131105e-05 [1/m^2]
  Abundance in 4.105e+09 [m^2] study area: 333781.8

hazrate-NoCovar

Code
  summary(fit)
Output
  Call: dfuncEstim(data = sparrowDf, formula = dist ~ 1 +
     groupsize(groupsize), likelihood = lhood, w.lo = w.lo, w.hi = w.hi,
     expansions = 0, series = "cosine", x.scl = 0, g.x.scl = 1,
     outputUnits = "m")
  Coefficients:
               Estimate  SE         z          p(>|z|)      
  (Intercept)  3.774729  0.1079167  34.978162  4.833460e-268
  k            2.405957  0.3096556   7.769785   7.861954e-15

  Convergence: Success
  Function: HAZRATE  
  Strip: 0 [m] to 150 [m] 
  Effective strip width (ESW): 61.11661 [m] 
  Probability of detection: 0.4074441
  Scaling: g(0 [m]) = 1
  Log likelihood: -1631.796 
  AICc: 3267.625

       Surveyed Units: 36000 [m] 
     Individuals seen: 371 in 353 groups 
   Average group size: 1.050992 
     Group size range: 1 to 3 
  Density in sampled area: 8.431059e-05 [1/m^2]
  Abundance in 4.105e+09 [m^2] study area: 346095

hazrate-ContinuousCovar

Code
  summary(fit)
Output
  Call: dfuncEstim(data = sparrowDf, formula = dist ~ bare +
     groupsize(groupsize), likelihood = lhood, w.lo = w.lo, w.hi = w.hi,
     expansions = 0, series = "cosine", x.scl = 0, g.x.scl = 1,
     outputUnits = "m")
  Coefficients:
               Estimate    SE           z          p(>|z|)     
  (Intercept)  3.06243838  0.275717186  11.107173  1.157672e-28
  bare         0.01325053  0.004247695   3.119463  1.811810e-03
  k            2.54787816  0.346483941   7.353525  1.930476e-13

  Convergence: Success
  Function: HAZRATE  
  Strip: 0 [m] to 150 [m] 
  Average effective strip width (ESW): 62.78889 [m] (range 45.37353 [m] to 81.93084 [m]) 
  Average probability of detection: 0.4185926 (range 0.3024902 to 0.5462056)
  Scaling: g(0 [m]) = 1
  Log likelihood: -1626.92 
  AICc: 3259.908

       Surveyed Units: 36000 [m] 
     Individuals seen: 371 in 353 groups 
   Average group size: 1.050992 
     Group size range: 1 to 3 
  Density in sampled area: 8.448723e-05 [1/m^2]
  Abundance in 4.105e+09 [m^2] study area: 346820.1

hazrate-FactorCovar

Code
  summary(fit)
Output
  Call: dfuncEstim(data = sparrowDf, formula = dist ~ observer +
     groupsize(groupsize), likelihood = lhood, w.lo = w.lo, w.hi = w.hi,
     expansions = 0, series = "cosine", x.scl = 0, g.x.scl = 1,
     outputUnits = "m")
  Coefficients:
                Estimate     SE         z           p(>|z|)      
  (Intercept)    3.91559085  0.1444321  27.1102575  7.453582e-162
  observerobs2   0.17191983  0.2027944   0.8477543   3.965748e-01
  observerobs3   0.06574319  0.1658299   0.3964496   6.917734e-01
  observerobs4  -0.38573845  0.1757132  -2.1952732   2.814401e-02
  observerobs5  -0.09584640  0.1671430  -0.5734395   5.663472e-01
  k              2.76472118  0.3481398   7.9414107   1.998946e-15

  Convergence: Success
  Function: HAZRATE  
  Strip: 0 [m] to 150 [m] 
  Average effective strip width (ESW): 64.83158 [m] (range 46.60934 [m] to 77.35058 [m]) 
  Average probability of detection: 0.4322105 (range 0.3107289 to 0.5156706)
  Scaling: g(0 [m]) = 1
  Log likelihood: -1627.509 
  AICc: 3267.26

       Surveyed Units: 36000 [m] 
     Individuals seen: 371 in 353 groups 
   Average group size: 1.050992 
     Group size range: 1 to 3 
  Density in sampled area: 8.12496e-05 [1/m^2]
  Abundance in 4.105e+09 [m^2] study area: 333529.6

hazrate-NoCovarWloWhi

Code
  summary(fit)
Output
  Call: dfuncEstim(data = sparrowDf, formula = dist ~ 1 +
     groupsize(groupsize), likelihood = lhood, w.lo = w.20, w.hi = w.hi,
     expansions = 0, series = "cosine", x.scl = w.20, g.x.scl = 1,
     outputUnits = "m")
  Coefficients:
               Estimate  SE         z          p(>|z|)      
  (Intercept)  3.814338  0.1117919  34.119989  3.727892e-255
  k            2.481511  0.3484759   7.121041   1.071152e-12

  Convergence: Success
  Function: HAZRATE  
  Strip: 2 [m] to 150 [m] 
  Effective strip width (ESW): 62.58799 [m] 
  Probability of detection: 0.4228918
  Scaling: g(2 [m]) = 1
  Log likelihood: -1526.016 
  AICc: 3056.069

       Surveyed Units: 36000 [m] 
     Individuals seen: 347 in 330 groups 
   Average group size: 1.051515 
     Group size range: 1 to 3 
  Density in sampled area: 7.70027e-05 [1/m^2]
  Abundance in 4.105e+09 [m^2] study area: 316096.1

hazrate-NoCovarWlo

Code
  summary(fit)
Output
  Call: dfuncEstim(data = sparrowDf, formula = dist ~ 1 +
     groupsize(groupsize), likelihood = lhood, w.lo = w.20, expansions =
     0, series = "cosine", x.scl = w.20, g.x.scl = 1, outputUnits = "m")
  Coefficients:
               Estimate  SE         z          p(>|z|)     
  (Intercept)  3.894830  0.1031639  37.753805  0.000000e+00
  k            2.933948  0.3696785   7.936486  2.079906e-15

  Convergence: Success
  Function: HAZRATE  
  Strip: 2 [m] to 207 [m] 
  Effective strip width (ESW): 65.61884 [m] 
  Probability of detection: 0.3200919
  Scaling: g(2 [m]) = 1
  Log likelihood: -1558.732 
  AICc: 3121.5

       Surveyed Units: 36000 [m] 
     Individuals seen: 350 in 333 groups 
   Average group size: 1.051051 
     Group size range: 1 to 3 
  Density in sampled area: 7.408103e-05 [1/m^2]
  Abundance in 4.105e+09 [m^2] study area: 304102.6

hazrate-NoCovarsFt

Code
  summary(fit)
Output
  Call: dfuncEstim(data = sparrowDf, formula = dist ~ 1 +
     groupsize(groupsize), likelihood = lhood, outputUnits = "ft")
  Coefficients:
               Estimate  SE          z          p(>|z|)     
  (Intercept)  5.040306  0.09954522  50.633332  0.000000e+00
  k            2.821023  0.32411484   8.703775  3.210234e-18

  Convergence: Success
  Function: HAZRATE  
  Strip: 0 [ft] to 679.1339 [ft] 
  Effective strip width (ESW): 209.5919 [ft] 
  Probability of detection: 0.3086165
  Scaling: g(0 [ft]) = 1
  Log likelihood: -2088.067 
  AICc: 4180.168

       Surveyed Units: 118110.2 [ft] 
     Individuals seen: 374 in 356 groups 
   Average group size: 1.050562 
     Group size range: 1 to 3 
  Density in sampled area: 7.554043e-06 [1/ft^2]
  Abundance in 44185852261 [ft^2] study area: 333781.8

hazrate-NoCovarExpansions

Code
  summary(fit)
Output
  Call: dfuncEstim(data = sparrowDf, formula = dist ~ 1 +
     groupsize(groupsize), likelihood = lhood, expansions = 2, outputUnits
     = "m")
  Coefficients:
               Estimate    SE         z          p(>|z|)     
  (Intercept)   2.9185280  0.4528771   6.444415  1.160469e-10
  k             2.2401149  0.2029433  11.038131  2.501838e-28
  a1           -0.3749832  0.1759458  -2.131243  3.306915e-02
  a2           -0.3825795  0.1988336  -1.924119  5.433966e-02

  Convergence: Success
  Function: HAZRATE with 2 expansion(s) of COSINE series 
  Strip: 0 [m] to 207 [m] 
  Effective strip width (ESW): 64.45754 [m] 
  Probability of detection: 0.3113891
  Scaling: g(0 [m]) = 1
  Log likelihood: -1661.781 
  AICc: 3331.677

       Surveyed Units: 36000 [m] 
     Individuals seen: 374 in 356 groups 
   Average group size: 1.050562 
     Group size range: 1 to 3 
  Density in sampled area: 8.058707e-05 [1/m^2]
  Abundance in 4.105e+09 [m^2] study area: 330809.9

hazrate-ContCovarExpansions

Code
  summary(fit)
Output
  Call: dfuncEstim(data = sparrowDf, formula = dist ~ bare +
     groupsize(groupsize), likelihood = lhood, expansions = 2, outputUnits
     = "m")
  Coefficients:
               Estimate     SE           z          p(>|z|)     
  (Intercept)   2.57285360  0.348271939   7.387485  1.496324e-13
  bare          0.01312417  0.004277266   3.068356  2.152400e-03
  k             2.43201406  0.239839529  10.140172  3.664540e-24
  a1           -0.32652796  0.194667765  -1.677360  9.347207e-02
  a2           -0.23085353  0.175986293  -1.311770  1.895978e-01

  Convergence: Success
  Function: HAZRATE with 2 expansion(s) of COSINE series 
  Strip: 0 [m] to 207 [m] 
  Average effective strip width (ESW): 68.24569 [m] (range 42.42778 [m] to 100.5137 [m]) 
  Average probability of detection: 0.3296893 (range 0.2049651 to 0.4855735)
  Scaling: g(0 [m]) = 1
  Log likelihood: -1657.406 
  AICc: 3324.983

       Surveyed Units: 36000 [m] 
     Individuals seen: 374 in 356 groups 
   Average group size: 1.050562 
     Group size range: 1 to 3 
  Density in sampled area: 8.086028e-05 [1/m^2]
  Abundance in 4.105e+09 [m^2] study area: 331931.4

hazrate-ContCovarExpansionsScaling

Code
  summary(fit)
Output
  Call: dfuncEstim(data = sparrowDf, formula = dist ~ bare +
     groupsize(groupsize), likelihood = lhood, expansions = 2, outputUnits
     = "m", x.scl = xScl, g.x.scl = gXscl)
  Coefficients:
               Estimate     SE           z          p(>|z|)     
  (Intercept)   2.57285360  0.348271936   7.387485  1.496323e-13
  bare          0.01312417  0.004277266   3.068356  2.152400e-03
  k             2.43201406  0.239839527  10.140172  3.664538e-24
  a1           -0.32652795  0.194667764  -1.677360  9.347208e-02
  a2           -0.23085353  0.175986291  -1.311770  1.895978e-01

  Convergence: Success
  Function: HAZRATE with 2 expansion(s) of COSINE series 
  Strip: 0 [m] to 207 [m] 
  Average effective strip width (ESW): 51.18427 [m] (range 31.82083 [m] to 75.38529 [m]) 
  Average probability of detection: 0.247267 (range 0.1537238 to 0.3641801)
  Scaling: g(0 [m]) = 0.75
  Log likelihood: -1657.406 
  AICc: 3324.983

       Surveyed Units: 36000 [m] 
     Individuals seen: 374 in 356 groups 
   Average group size: 1.050562 
     Group size range: 1 to 3 
  Density in sampled area: 0.0001078137 [1/m^2]
  Abundance in 4.105e+09 [m^2] study area: 442575.2

hazrate-Bootstraps

Code
  summary(fit)
Output
  Call: dfuncEstim(data = sparrowDf, formula = dist ~
     groupsize(groupsize), likelihood = lhood)
  Coefficients:
               Estimate  SE          z          p(>|z|)     
  (Intercept)  3.852207  0.09954916  38.696528  0.000000e+00
  k            2.821023  0.32412762   8.703432  3.219955e-18

  Convergence: Success
  Function: HAZRATE  
  Strip: 0 [m] to 207 [m] 
  Effective strip width (ESW): 63.88362 [m] 
  Probability of detection: 0.3086165
  Scaling: g(0 [m]) = 1
  Log likelihood: -1665.103 
  AICc: 3334.241

       Surveyed Units: 36000 [m] 
     Individuals seen: 374 in 356 groups 
   Average group size: 1.050562 
     Group size range: 1 to 3

  Density in sampled area: 8.131105e-05 [1/m^2]
                   95% CI: 6.608967e-05 [1/m^2] to 0.000103622 [1/m^2]

  Abundance in 4.105e+09 [m^2] study area: 333781.8
                                   95% CI: 271298.1 to 425368.2


tmcd82070/Rdistance documentation built on April 13, 2025, 1:38 p.m.