getPars: Parameter Names for the Model

In tmelliott/bsm: Bayesian Selectivity Modelling of Fisheries Trawl Data

Description

Returns lists of parameter names for summaries, initial values, etc.

Usage

getPars(family = "binomial", curve = "logistic", check.od = FALSE,
  od = FALSE, combine = is.null(random), random = NULL, L50 = NULL,
  SR = NULL, phi = NULL, delta = NULL, length.dist = "iid",
  paired = FALSE, ...)

Arguments

family	"logistic" (default) or "poisson", the family for the likelihood
curve	"logistic" or "richards", the type of selection curve to be fitted (will likely allow other options, for example "Bspline", future)
check.od	logical, if TRUE, then overdispersion estimates will be produced
od	logical, if TRUE, the model will be fit allowing for overdispersion
combine	logical, if TRUE, then the "combined hauls" approach is used, otherwise a hierarchical approach is used.
random	vector of parameters to have hierarchical or random effects
L50	the formula for L50, default is L50 = ~haul
SR	the formula for SR, default is SR = ~haul
phi	the formula for phi, default is phi = ~haul
delta	the formula for delta, default is delta = ~1
length.dist	"iid" or "multinomial", the type of length distribution for the lambda parameters. See details for more information.
paired	whether or not the data are paired
...	additional arguments

Details

Not much to know.

Value

lists of parameters

Author(s)

Tom Elliott

tmelliott/bsm documentation built on May 31, 2019, 4:38 p.m.