makeModel: Make JAGS Model

In tmelliott/bsm: Bayesian Selectivity Modelling of Fisheries Trawl Data

Description

Write the model file in JAGS syntax.

Usage

makeModel(family = "binomial", curve = "logistic", check.od = FALSE,
  od = FALSE, combine = is.null(random), random = NULL, L50 = NULL,
  SR = NULL, phi = NULL, delta = NULL, priors = NULL,
  length.dist = "iid", paired, file = tempfile(), show.info = TRUE, ...)

Arguments

family	"logistic" (default) or "poisson", the family for the likelihood
curve	"logistic" or "richards", the type of selection curve to be fitted (will likely allow other options, for example "Bspline", future)
check.od	logical, if TRUE, then overdispersion estimates will be produced
od	logical, if TRUE, the model will be fit allowing for overdispersion
combine	logical, if TRUE, then the "combined hauls" approach is used, otherwise a hierarchical approach is used.
random	vector of parameters to have hierarchical or random effects
L50	the formula for L50, default is L50 = ~haul
SR	the formula for SR, default is SR = ~haul
phi	the formula for phi, default is phi = ~haul
delta	the formula for delta, default is delta = ~1
priors	the prior distributions for specified parameters. See details.
length.dist	"iid" or "multinomial", the type of length distribution for the lambda parameters. See details for more information.
paired	whether the data are paired or not
file	the file name to save the JAGS model in. If NULL, then a temporary file is created
show.info	logical, if FALSE, the package information will not be printed
...	additional arguments

Details

A whole lot of fancyness that makes the JAGS model.

Value

NULL?

Author(s)

Tom Elliott

tmelliott/bsm documentation built on May 31, 2019, 4:38 p.m.