README.md

In tmirus/TTT: What the Package Does (One Line, Title Case)

TTT (Tissue Transcriptomics Toolbox)

Spatial Transcriptomics (ST) is a sequencing technology that combines RNA-Seq with spatial barcodes. This enables analysis of transcriptomic data in a spatial context. TTT contains tools for preprocessing, normalization, clustering and further analysis as well as visualisation methods for ST data.

Installation

You can install this package in one of the following ways: - with BiocManager:

install.packages(c("BiocManager", "remotes"))
BiocManager::install("tmirus/TTT")

• with devtools:

install.packages("devtools")
devtools::install_github("https://github.com/tmirus/TTT")

• manually:

git clone https://github.com/tmirus/TTT
cd TTT
R CMD INSTALL ./

The last option requires manual installation of all dependencies: - ggplot2 - EBImage - genlasso - biomaRt - Rtsne - multtest - cluster - gridExtra - RColorBrewer - doParallel - topGO - foreach - uwot - igraph - FNN - GO.db - sctransform - factoextra

tmirus/TTT documentation built on April 17, 2021, 11:04 p.m.