spatial_gene_plots: create spatial plots for the top n.genes genes in a given...
In tmirus/TTT: What the Package Does (One Line, Title Case)

create spatial plots for the top n.genes genes in a given table and store them as pdf

spatial_gene_plots(
  gene.table,
  counts,
  ids,
  img = NULL,
  plot.params = NULL,
  n.genes = NULL,
  filepath = NULL,
  filename = "spatial_genes.pdf",
  colour = "black"
)

`gene.table`	data frame containing interesting genes, as returned by filter_genes (or entry differential.genes of analyze_clustering output)
`counts`	non-negative numeric matrix containing gene expression for all spots (spots x genes)
`ids`	barcode data frame assigning spatial coordinates to all spots; column names 'X' and 'Y'
`img`	ST image (EBImage object) if available. Will be used as plotting background if plot.params is provided. If not available, leave default NULL.
`plot.params`	list created by plot_adjustment; only needed if img is provided
`n.genes`	integer, number of genes to be plotted (starting from the top of gene.table); optional
`filepath`	character specifying the directory in which the output file ('spatial_genes.pdf') should be stored
`filename`	character specifying the name of the pdf file; default "spatial_genes.pdf"
`colour`	character specifying the colour of the spots in the gene expression plots; default "black"