createSpectraFromMetIDQ: Create Spectra object from a list of SummarizedExperiment...

In tnaake/MsQualityUtils: What the package does (short line)

Create Spectra object from a list of SummarizedExperiment objects

Description

The function createSpectraFromMetIDQ will a Spectra object from list of SummarizedExperiment objects.

Usage

createSpectraFromMetIDQ(se_l, rt)

Arguments

se_l	list of SummarizedExperiment objects
rt	SummarizedExperiment object containing the retention time in the assay slot

Details

createSpectraFromMetIDQ will stop if there are duplicate sample names across the SummarizedExperiment objects.

Author(s)

Thomas Naake

Examples

## create rt object
rt <- loadRt()

## create se object
path <- system.file("metidq", package = "MsQualityUtils")
se_l <- createListOfSummarizedExperimentFromMetIDQ(path = path, sheet = 1)

## run the createSpectraFromMetIDQ
createSpectraFromMetIDQ(se_l = se_l, rt = rt)

tnaake/MsQualityUtils documentation built on Feb. 3, 2023, 6:32 a.m.