Example_data/README.md

In tobiasgf/lulu: Post Clustering Curation of Amplicon Data for Reliable Biodiversity Metrics

Example data

This data is example data to test the LULU algorithm on.

It contains an OTU table (plant ITS2 sequende data from 130 sites) and corresponding centroid sequences. It corresponds to the 97% clustering (VSEARCH) dataset from the original publication: Frøslev, T. G., Kjøller, R., Bruun, H. H., Ejrnæs, R., Brunbjerg, A. K., Pietroni, C., & Hansen, A. J. (2017). Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates. Nature Communications, 8(1), 1188. https://www.nature.com/articles/s41467-017-01312-x

A tutorial for how to analyse (curate) the data can be found here: https://github.com/tobiasgf/lulu#tutorial

tobiasgf/lulu documentation built on Jan. 17, 2024, 3:57 p.m.