Man pages for tonedivad/metaboGoS
Metabolomics
| BGIons | BGIons. |
| calibMS1 | Convert CFM file to MGF some stufff |
| CFM | Convert CFM file to MGF some stufff |
| cleanTremolo | Clean up Tremolo mess |
| combMSetentries | combMSetentries stuff |
| combMSMS | Return MS/MS sparse matrix from a list spectra |
| compOneSimCosM | cosine similarity |
| compSimSPmat | Compute smilarity between 1 or 2 MS/MS sparse matrices |
| dda2Midas | Interface to Midas |
| eicGather | Merge ROIs/EICs from several files |
| eicGather2 | Merge ROIs/EICs from several files not very fast plus pbs... |
| eicXcmsRaw-methods | get the xcmsRaw lighter |
| export2MSP | Export a list of files to MSP |
| extractPIRoi | Extract ROI around spectra Fast association of spectra to... |
| extractRoiMS1 | extractRoiMS1 Refine/integra ROI |
| genMidasCfg | Configuration file for Midas |
| getMF.7GR | Interface to the 7GR executable |
| getMF.sirius | Interface to Sirius |
| getTremololist | set-up Tremolo input |
| HilicRT. | HilicRT. |
| IK2smi | IK2smi. |
| infctMRoi.chkclosemz | Merge slices from the same sample within a single ROI |
| infctMRoi.compstats | Compute stats for each group of EIC |
| infctMRoi.get | Gather the rois for each resfile |
| infctMRoi.loopmzrt | Iterative merging of slices with overlaping mz/rt within a... |
| infctMRoi.mergeclosemz | Wrapper for infctMRoi.chkclosemz: loop over GrpEIC |
| infctMRoi.mergemzrt | 1 Merge based on dmz or overlap in mz 2 merge on mz/rt... |
| infctMRoi.splitmzdens | Split ROI based on density mz |
| infctMRoi.splitmzrt | Double merge on mz/rt - wrapper for infctMRoi.loopmzrt |
| makeMetaboSet | makeMetaboSet stuff |
| mapMS2toMetaboSet | mapMS2toMetaboSet stuff |
| mergeMSMS | Merge list of ms/ms spectra |
| mergeMSMS.2 | Merge list of ms/ms spectra |
| mergeROIs | Ridiculusly complicated mergingof ROIS |
| MolFormDF | MolFormDF. |
| parseOneDDA | Load DDA run from a mzXML file |
| plotOneDDA | Plot DDA object |
| plotResMatch | plotting |
| readMGFfile | Read MGF file |
| readTremolo | read Tremolo output |
| refinePIRoi | refine PI ROI Refine/integra ROI around spectra after... |
| runTremolo | read Tremolo output |
| satremoval | Artfact removal in duples |
| satremXcmsRaw-methods | Remove artefact in xcmsRaw object get the xcmsRaw lighter |
