BGIons | BGIons. |
calibMS1 | Convert CFM file to MGF some stufff |
CFM | Convert CFM file to MGF some stufff |
cleanTremolo | Clean up Tremolo mess |
combMSetentries | combMSetentries stuff |
combMSMS | Return MS/MS sparse matrix from a list spectra |
compOneSimCosM | cosine similarity |
compSimSPmat | Compute smilarity between 1 or 2 MS/MS sparse matrices |
dda2Midas | Interface to Midas |
eicGather | Merge ROIs/EICs from several files |
eicGather2 | Merge ROIs/EICs from several files not very fast plus pbs... |
eicXcmsRaw-methods | get the xcmsRaw lighter |
export2MSP | Export a list of files to MSP |
extractPIRoi | Extract ROI around spectra Fast association of spectra to... |
extractRoiMS1 | extractRoiMS1 Refine/integra ROI |
genMidasCfg | Configuration file for Midas |
getMF.7GR | Interface to the 7GR executable |
getMF.sirius | Interface to Sirius |
getTremololist | set-up Tremolo input |
HilicRT. | HilicRT. |
IK2smi | IK2smi. |
infctMRoi.chkclosemz | Merge slices from the same sample within a single ROI |
infctMRoi.compstats | Compute stats for each group of EIC |
infctMRoi.get | Gather the rois for each resfile |
infctMRoi.loopmzrt | Iterative merging of slices with overlaping mz/rt within a... |
infctMRoi.mergeclosemz | Wrapper for infctMRoi.chkclosemz: loop over GrpEIC |
infctMRoi.mergemzrt | 1 Merge based on dmz or overlap in mz 2 merge on mz/rt... |
infctMRoi.splitmzdens | Split ROI based on density mz |
infctMRoi.splitmzrt | Double merge on mz/rt - wrapper for infctMRoi.loopmzrt |
makeMetaboSet | makeMetaboSet stuff |
mapMS2toMetaboSet | mapMS2toMetaboSet stuff |
mergeMSMS | Merge list of ms/ms spectra |
mergeMSMS.2 | Merge list of ms/ms spectra |
mergeROIs | Ridiculusly complicated mergingof ROIS |
MolFormDF | MolFormDF. |
parseOneDDA | Load DDA run from a mzXML file |
plotOneDDA | Plot DDA object |
plotResMatch | plotting |
readMGFfile | Read MGF file |
readTremolo | read Tremolo output |
refinePIRoi | refine PI ROI Refine/integra ROI around spectra after... |
runTremolo | read Tremolo output |
satremoval | Artfact removal in duples |
satremXcmsRaw-methods | Remove artefact in xcmsRaw object get the xcmsRaw lighter |
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