Man pages for tonedivad/metaboGoS
Metabolomics

BGIonsBGIons.
calibMS1Convert CFM file to MGF some stufff
CFMConvert CFM file to MGF some stufff
cleanTremoloClean up Tremolo mess
combMSetentriescombMSetentries stuff
combMSMSReturn MS/MS sparse matrix from a list spectra
compOneSimCosMcosine similarity
compSimSPmatCompute smilarity between 1 or 2 MS/MS sparse matrices
dda2MidasInterface to Midas
eicGatherMerge ROIs/EICs from several files
eicGather2Merge ROIs/EICs from several files not very fast plus pbs...
eicXcmsRaw-methodsget the xcmsRaw lighter
export2MSPExport a list of files to MSP
extractPIRoiExtract ROI around spectra Fast association of spectra to...
extractRoiMS1extractRoiMS1 Refine/integra ROI
genMidasCfgConfiguration file for Midas
getMF.7GRInterface to the 7GR executable
getMF.siriusInterface to Sirius
getTremololistset-up Tremolo input
HilicRT.HilicRT.
IK2smiIK2smi.
infctMRoi.chkclosemzMerge slices from the same sample within a single ROI
infctMRoi.compstatsCompute stats for each group of EIC
infctMRoi.getGather the rois for each resfile
infctMRoi.loopmzrtIterative merging of slices with overlaping mz/rt within a...
infctMRoi.mergeclosemzWrapper for infctMRoi.chkclosemz: loop over GrpEIC
infctMRoi.mergemzrt1 Merge based on dmz or overlap in mz 2 merge on mz/rt...
infctMRoi.splitmzdensSplit ROI based on density mz
infctMRoi.splitmzrtDouble merge on mz/rt - wrapper for infctMRoi.loopmzrt
makeMetaboSetmakeMetaboSet stuff
mapMS2toMetaboSetmapMS2toMetaboSet stuff
mergeMSMSMerge list of ms/ms spectra
mergeMSMS.2Merge list of ms/ms spectra
mergeROIsRidiculusly complicated mergingof ROIS
MolFormDFMolFormDF.
parseOneDDALoad DDA run from a mzXML file
plotOneDDAPlot DDA object
plotResMatchplotting
readMGFfileRead MGF file
readTremoloread Tremolo output
refinePIRoirefine PI ROI Refine/integra ROI around spectra after...
runTremoloread Tremolo output
satremovalArtfact removal in duples
satremXcmsRaw-methodsRemove artefact in xcmsRaw object get the xcmsRaw lighter
tonedivad/metaboGoS documentation built on May 31, 2019, 6:21 p.m.