parseOneDDA: Load DDA run from a mzXML file

Description Usage Arguments Value

Description

This function loads a DDA/DIA/AIF run from a mzXML file

Usage

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parseOneDDA(cefi, parDeco = NULL, add2File = NULL, defIsolation = 0.501,
  calibFct = NULL, cleanMS2 = TRUE, save = FALSE, outfile = NULL,
  roundmz = 6, verbose = T, sid = add2File$Sid, useSid = !is.null(sid),
  stype = NULL, rtlim = suppressWarnings(sort(range(parDeco$rtlim))))

Arguments

cefi

Path to the input file

parDeco

List of decoParams

add2File

Additional information to complement the file infos

defIsolation

Default isolation window around precursor

save

Save FALSE/TRUE

outfile

Filename to save

roundmz

Rounding for the mass

verbose

Print stuff out

sid

Sample id to given

useSid

Add sid to the spectra names

stype

Sample type

rtlim

Limit MS/MS to a certain range

Value

List of list


tonedivad/metaboGoS documentation built on May 31, 2019, 6:21 p.m.