parseOneDDA: Load DDA run from a mzXML file

In tonedivad/metaboGoS: Metabolomics

Description

This function loads a DDA/DIA/AIF run from a mzXML file

Usage

parseOneDDA(cefi, parDeco = NULL, add2File = NULL, defIsolation = 0.501,
  calibFct = NULL, cleanMS2 = TRUE, save = FALSE, outfile = NULL,
  roundmz = 6, verbose = T, sid = add2File$Sid, useSid = !is.null(sid),
  stype = NULL, rtlim = suppressWarnings(sort(range(parDeco$rtlim))))

Arguments

cefi	Path to the input file
parDeco	List of decoParams
add2File	Additional information to complement the file infos
defIsolation	Default isolation window around precursor
save	Save FALSE/TRUE
outfile	Filename to save
roundmz	Rounding for the mass
verbose	Print stuff out
sid	Sample id to given
useSid	Add sid to the spectra names
stype	Sample type
rtlim	Limit MS/MS to a certain range

Value

List of list

tonedivad/metaboGoS documentation built on May 31, 2019, 6:21 p.m.