cash-writeRA: RA Method: Write genotype data to RA format
In tpbilton/GUSbase: Genotyping Uncertainty with Sequencing Data: Base Package

$writeRA

R Documentation

RA Method: Write genotype data to RA format

Description

Method for converting allele count data in an RA object back to an RA file.

Usage

RAobj$writeRA(snpsubset=NULL, indsubset=NULL, file="GUSbase")

Arguments

snpsubset: Integer vector giving the indices of the SNPs to retain in the VCF file
indsubset: Integer vector giving the indices of the samples to retain in the VCF file
file: Character giving the name of the VCF file to be written

Author(s)

Timothy P. Bilton

Examples

file <- simDS()
RAfile <- VCFtoRA(file$vcf)
subset <- readRA(RAfile, snpsubset = 10:30)

## write the subset of the data back to VCF format
subset$writeRA(indsubset=1:10, file = "subset")

tpbilton/GUSbase documentation built on March 8, 2024, 1:35 p.m.