Files in trang1618/tdapseudotime
Temporal Phenotyping via Topological Data Analysis and Pseudo Time
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/data.R
R/globals.R
R/graph-funcs.R
R/math-funcs.R
R/processing.R
R/utils-pipe.R
_pkgdown.yml
data-raw/fetch_data.R
data/centroids.rda
data/processed_data.rda
data/scaled_lab_mat.rda
data/sim_dat.rda
man/add_clust_info.Rd
man/centroids.Rd
man/color_clust.Rd
man/color_graph.Rd
man/color_vertex.Rd
man/commu_clus.Rd
man/compute_similarity.Rd
man/convert_id_to_node.Rd
man/cosine_sim_func.Rd
man/figures/unnamed-chunk-10-1.png
man/figures/unnamed-chunk-10-2.png
man/figures/unnamed-chunk-11-1.png
man/figures/unnamed-chunk-12-1.png
man/figures/unnamed-chunk-12-2.png
man/figures/unnamed-chunk-13-1.png
man/figures/unnamed-chunk-13-2.png
man/figures/unnamed-chunk-14-1.png
man/figures/unnamed-chunk-15-1.png
man/figures/unnamed-chunk-19-1.png
man/figures/unnamed-chunk-19-2.png
man/figures/unnamed-chunk-20-1.png
man/figures/unnamed-chunk-8-1.png
man/figures/unnamed-chunk-9-1.png
man/find_trajectories.Rd
man/get_graph_properties.Rd
man/make_tda_graph.Rd
man/map_tda.Rd
man/minspantree.Rd
man/node_color.Rd
man/out_trajectories.Rd
man/pipe.Rd
man/processed_data.Rd
man/resize_nodes.Rd
man/scaled_lab_mat.Rd
man/shortest_paths_func.Rd
man/sim_dat.Rd
man/sim_intersection.Rd
man/sim_jaccard.Rd
man/sim_length.Rd
man/weight_edges.Rd
man/widen_i2b2.Rd
readme.Rmd
readme.md
tdapseudotime.Rproj
vignettes/man/figures/unnamed-chunk-10-1.png
vignettes/man/figures/unnamed-chunk-13-1.png
vignettes/man/figures/unnamed-chunk-13-2.png
vignettes/man/figures/unnamed-chunk-14-1.png
vignettes/man/figures/unnamed-chunk-8-1.png
vignettes/test-data.csv
vignettes/test.Rmd
vignettes/train-data.csv
vignettes/train.Rmd
