color_graph: Color nodes of graph given coloring method.

In trang1618/tdapseudotime: Temporal Phenotyping via Topological Data Analysis and Pseudo Time

Description

Color nodes of graph given coloring method.

Usage

color_graph(
  f_sim_map,
  f_graph,
  f_time,
  my_colors,
  method = c("basic", "clust_shade", "clust_color", "none")
)

Arguments

f_sim_map	TDAmapper object
f_graph	igraph object, out put from graph.adjacency
f_time	Data frame of the original data but with only two columns: ID and val (e.g., time)
my_colors	Character vector of hex values specifying color palette for enrichment.
method	Character string specifying the coloring method. Can be 'basic', 'clust_shade' or 'clust_color'.

Value

Modified graph with colors at nodes.

trang1618/tdapseudotime documentation built on Feb. 9, 2021, 6:14 p.m.