get_graph_properties: Get basic properties of graph
In trang1618/tdapseudotime: Temporal Phenotyping via Topological Data Analysis and Pseudo Time
Description
Usage
Arguments
Value
Examples
Description
Get basic properties of graph
Usage
1
get_graph_properties(f_graph, f_sim_map = NULL, simplified = TRUE)
Arguments
f_graph
igraph object, out put from graph.adjacency
f_sim_map
Optional TDAmapper object
simplified
Boolean. If TRUE, return a numeric vectors of
basic properties. If FALSE, return a more comprehensive list of
properties including maximal connected components and
number of elements in each node.
Value
List or numeric vector of different properties including
number of graph components, number of nodes, median degree,
edge density, etc.
Examples
1
2
3
my_tda <- map_tda(scaled_lab_mat)
my_graph <- make_tda_graph(my_tda, processed_data, 'time')
get_graph_properties(my_graph)
trang1618/tdapseudotime documentation built on Feb. 9, 2021, 6:14 p.m.
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Description Usage Arguments Value Examples
Description
Get basic properties of graph
Usage
1 | get_graph_properties(f_graph, f_sim_map = NULL, simplified = TRUE)
|
Arguments
f_graph |
igraph object, out put from graph.adjacency |
f_sim_map |
Optional TDAmapper object |
simplified |
Boolean. If TRUE, return a numeric vectors of basic properties. If FALSE, return a more comprehensive list of properties including maximal connected components and number of elements in each node. |
Value
List or numeric vector of different properties including number of graph components, number of nodes, median degree, edge density, etc.
Examples
1 2 3 | my_tda <- map_tda(scaled_lab_mat)
my_graph <- make_tda_graph(my_tda, processed_data, 'time')
get_graph_properties(my_graph)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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