Files in trannhatanh89/HPAanalyze

Retrieve and analyze data from the Human Protein Atlas

.Rbuildignore

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.github/workflows/check-bioc.yml

.gitignore

CODE_OF_CONDUCT.md

DESCRIPTION

LICENSE

NAMESPACE

NEWS

R/download.R R/hpa_histology_data.R R/one.R

R/sysdata.rda

R/utils.R R/vis.R R/xml.R README.Rmd README.md

_pkgdown.yml

data/hpa_histology_data.rda

data_raw/example_data.R data_raw/gene_ensembl_lookup_table.R

docs/404.html

docs/LICENSE-text.html

docs/_config.yml

docs/articles/a_HPAanalyze_quick_start.html

docs/articles/a_HPAanalyze_quick_start_files/elevate-section-attrs-2.0/elevate-section-attrs.js

docs/articles/a_HPAanalyze_quick_start_files/figure-html/hpaVisPatho_eg-1.png

docs/articles/a_HPAanalyze_quick_start_files/figure-html/hpaVis_eg-1.png

docs/articles/a_HPAanalyze_quick_start_files/figure-html/hpaVis_eg3-1.png

docs/articles/a_HPAanalyze_quick_start_files/jquery-1.11.3/jquery.min.js

docs/articles/b_HPAanalyze_indepth.html

docs/articles/b_HPAanalyze_indepth_files/elevate-section-attrs-2.0/elevate-section-attrs.js

docs/articles/b_HPAanalyze_indepth_files/figure-html/hpaVis_eg-1.png

docs/articles/b_HPAanalyze_indepth_files/figure-html/visPatho-1.png

docs/articles/b_HPAanalyze_indepth_files/figure-html/visSubcell-1.png

docs/articles/b_HPAanalyze_indepth_files/figure-html/visTissue-1.png

docs/articles/b_HPAanalyze_indepth_files/jquery-1.11.3/jquery.min.js

docs/articles/c_HPAanalyze_case_query.html

docs/articles/c_HPAanalyze_case_query_files/elevate-section-attrs-2.0/elevate-section-attrs.js

docs/articles/c_HPAanalyze_case_query_files/jquery-1.11.3/jquery.min.js

docs/articles/d_HPAanalyze_case_offline_xml.html

docs/articles/d_HPAanalyze_case_offline_xml_files/elevate-section-attrs-2.0/elevate-section-attrs.js

docs/articles/d_HPAanalyze_case_offline_xml_files/jquery-1.11.3/jquery.min.js

docs/articles/e_HPAanalyze_case_json.html

docs/articles/e_HPAanalyze_case_json_files/elevate-section-attrs-2.0/elevate-section-attrs.js

docs/articles/e_HPAanalyze_case_json_files/jquery-1.11.3/jquery.min.js

docs/articles/f_HPAanalyze_case_images.html

docs/articles/f_HPAanalyze_case_images_files/elevate-section-attrs-2.0/elevate-section-attrs.js

docs/articles/f_HPAanalyze_case_images_files/jquery-1.11.3/jquery.min.js

docs/articles/figures/hex.png

docs/articles/figures/query_dropdown.png

docs/articles/figures/query_fields.png

docs/articles/figures/query_search.png

docs/articles/figures/query_tsvlink.png

docs/articles/figures/query_vis.png

docs/articles/figures/workflow.png

docs/articles/index.html

docs/articles/z_HPAanalyze_paper_figures.html

docs/articles/z_HPAanalyze_paper_figures_files/elevate-section-attrs-2.0/elevate-section-attrs.js

docs/articles/z_HPAanalyze_paper_figures_files/jquery-1.11.3/jquery.min.js

docs/authors.html

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/TP53_EGFR_in_tissue_cancer.xlsx.xlsx

docs/reference/hpaDownload.html

docs/reference/hpaExport.html

docs/reference/hpaListParam.html

docs/reference/hpaVis-1.png

docs/reference/hpaVis.html

docs/reference/hpaVisPatho-1.png

docs/reference/hpaVisPatho.html

docs/reference/hpaVisSubcell-1.png

docs/reference/hpaVisSubcell.html

docs/reference/hpaVisTissue-1.png

docs/reference/hpaVisTissue.html

docs/reference/hpaXml.html

docs/reference/hpaXmlAntibody.html

docs/reference/hpaXmlGet.html

docs/reference/hpaXmlProtClass.html

docs/reference/hpaXmlTissueExpr.html

docs/reference/hpaXmlTissueExprSum.html

docs/reference/hpa_downloaded_histology_v18.html

docs/reference/hpa_histology_data.html

docs/reference/index.html

inst/CITATION

man/hpaDownload.Rd man/hpaExport.Rd man/hpaListParam.Rd man/hpaVis.Rd man/hpaVisPatho.Rd man/hpaVisSubcell.Rd man/hpaVisTissue.Rd man/hpaXml.Rd man/hpaXmlAntibody.Rd man/hpaXmlGet.Rd man/hpaXmlProtClass.Rd man/hpaXmlTissueExpr.Rd man/hpaXmlTissueExprSum.Rd man/hpa_histology_data.Rd vignettes/a_HPAanalyze_quick_start.Rmd vignettes/b_HPAanalyze_indepth.Rmd vignettes/c_HPAanalyze_case_query.Rmd vignettes/d_HPAanalyze_case_offline_xml.Rmd

vignettes/data/ENSG00000134057.xml

vignettes/data/copyright

vignettes/e_HPAanalyze_case_json.Rmd vignettes/f_HPAanalyze_case_images.Rmd

vignettes/figures/hex.png

vignettes/figures/query_dropdown.png

vignettes/figures/query_fields.png

vignettes/figures/query_search.png

vignettes/figures/query_tsvlink.png

vignettes/figures/query_vis.png

vignettes/figures/workflow.png

vignettes/z_HPAanalyze_paper_figures.Rmd

trannhatanh89/HPAanalyze documentation built on June 6, 2023, 4:31 p.m.