cirPlot4pathway | R Documentation |
The individual CpGs or genes within a given set of pathways are displayed as the dots in the resulting plot. The significance of the CpGs or genes are illustrated by the negative log P value.
cirPlot4pathway(datalist, topPathID, core = MulticoreParam(), fileName = NULL)
datalist |
The input data list containing ordered collections of matrices. |
topPathID |
A predefined pathway IDs. |
core |
The number of cores used for computation. (Default: 10) |
fileName |
Add a character to the output file name. (Default: 'Circular-Manhattan.pval.jpeg') |
Top 10 or 20 pathways are usually suggested to be visualized. The significant features (if any) are highlighted using filled diamond. The significance line is set as 0.05 marked as dashed red line.
An output image file.
omics2pathlist
.
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