et_readFiles: et_readFiles
In travis-m-blimkie/EssentialTnSeq: TnSeq Essentiality Analysis

Description Usage Arguments Value References See Also Examples

View source: R/et_readFiles.R

Reads in multiples files, corresponding to different conditions and replicates from TnSeq analysis with Gumbel of Tradis. Creates a nested, named list of data frames for further analysis. This function is set to look for files recursively, meaning it will descend into sub-directories from the given starting point.

1	et_readFiles(tool, conditions, num_reps, data_folder)

`tool`	String; one of "Gumbel" or "Tradis".
`conditions`	List of conditions (character). These should correspond to file names, and should be specific and non-overlapping.
`num_reps`	The number of replicates, corresponding to the number of files for each condition.
`data_folder`	Directory containing files for all conditions and replicates.

Nested and named list of data frames for all conditions and replicates.

None.

https://github.com/hancockinformatics/EssentialTnSeq

## Not run: 
  et_readFiles(
    tool = "Gumbel",
    conditions = c("treatment", "control"),
    num_reps = 3,
    data_folder = "GumbelResults"
  )

## End(Not run)