enrich_network: Test a tidygraph network object for enriched Reactome...

In travis-m-blimkie/networker: Reproducible PPI Network Creation and Visualization in R

Test a tidygraph network object for enriched Reactome pathways

Description

Test a tidygraph network object for enriched Reactome pathways

Usage

enrich_network(network, filter = 0.05, background = NULL)

Arguments

network	tidygraph object, i.e. one output by build_network with Ensembl IDs as node names
filter	Desired adjusted p-value threshold for filtering output pathways. Defaults to 0.05.
background	Optional background genes used when testing

Value

A tibble of significantly enriched Reactome pathways

References

See https://www.bioconductor.org/packages/ReactomePA/ for details on ReactomePA's methods.

See Also

https://github.com/travis-m-blimkie/networker

travis-m-blimkie/networker documentation built on June 3, 2023, 10:17 p.m.