innatedb_exp: Experimentally verified human PPI data downloaded from...
In travis-m-blimkie/networker: Reproducible PPI Network Creation and Visualization in R
innatedb_exp R Documentation
Experimentally verified human PPI data downloaded from InnateDB
Description
A data frame containing human PPI data from InnateDB, from the entry
"All Experimentally Validated Interactions (updated weekly)" at
https://innatedb.com/redirect.do?go=downloadImported. A few important steps
have been taken to filter the data, namely the removal of duplicate
interactions, and removing interactions that have the same components but are
swapped between A and B.
Usage
innatedb_exp
Format
A data frame (tibble) with 152259 rows and 4 columns:
- ensembl_gene_A
Ensembl gene ID for the first gene/protein in the
interaction
- hgnc_symbol_A
HGNC symbol for the first gene/protein in the
interaction
- ensembl_gene_B
Ensembl gene ID for the second gene/protein in the
interaction
- hgnc_symbol_B
HGNC symbol for the second gene/protein in the
interaction
travis-m-blimkie/networker documentation built on June 3, 2023, 10:17 p.m.
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| innatedb_exp | R Documentation |
Experimentally verified human PPI data downloaded from InnateDB
Description
A data frame containing human PPI data from InnateDB, from the entry "All Experimentally Validated Interactions (updated weekly)" at https://innatedb.com/redirect.do?go=downloadImported. A few important steps have been taken to filter the data, namely the removal of duplicate interactions, and removing interactions that have the same components but are swapped between A and B.
Usage
innatedb_exp
Format
A data frame (tibble) with 152259 rows and 4 columns:
- ensembl_gene_A
Ensembl gene ID for the first gene/protein in the interaction
- hgnc_symbol_A
HGNC symbol for the first gene/protein in the interaction
- ensembl_gene_B
Ensembl gene ID for the second gene/protein in the interaction
- hgnc_symbol_B
HGNC symbol for the second gene/protein in the interaction
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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