README.md

In treenet/treenetproc: Clean, Process and Visualize Dendrometer Data

treenetproc

The package treenetproc cleans, processes and visualises highly resolved time series of dendrometer data. In two steps, raw dendrometer data is aligned to regular time intervals and cleaned.

Further, the package offers functions to extract the day of the year of the start and end of the growing season as well as several characteristics of shrinkage and expansion phases.

Installation

You can install the latest stable version of the package from GitHub with:

# install.packages("devtools")
library(devtools)
devtools::install_github("treenet/treenetproc")

Example

Below you can see a basic example of a processing result.

For sample code and a demonstration of an exemplary workflow, see the vignette ‘Introduction to treenetproc’:

browseVignettes("treenetproc")

If you want to access the vignettes you need to build them when installing the package:

# install.packages("devtools")
library(devtools)
devtools::install_github("treenet/treenetproc", build_vignettes = TRUE)

Citation

To cite treenetproc in a publication use:

citation("treenetproc")
#> 
#> To cite treenetproc in publications use:
#> 
#>   Knüsel S., Peters R.L., Haeni M., Wilhelm M., Zweifel R. 2021.
#>   Processing and extraction of seasonal tree physiological parameters
#>   from stem radius time series. Forests: 12(6): 765.
#>   https://doi.org/10.3390/f12060765.
#> 
#>   Haeni M., Knüsel S., Wilhelm M., Peters R.L., Zweifel R. 2020.
#>   treenetproc - Clean, process and visualise dendrometer data. R
#>   package version 0.1.4. Github repository:
#>   https://github.com/treenet/treenetproc
#> 
#>   Hadley Wickham, Romain François, Lionel Henry and Kirill Müller
#>   (2019). dplyr: A Grammar of Data Manipulation. R package version
#>   0.8.3. https://CRAN.R-project.org/package=dplyr
#> 
#> To see these entries in BibTeX format, use 'print(<citation>,
#> bibtex=TRUE)', 'toBibtex(.)', or set
#> 'options(citation.bibtex.max=999)'.

treenet/treenetproc documentation built on June 16, 2021, 4:39 p.m.