calc_var_pi: Function to calculate the sampling variance of pi (Nei 1987,...
In trevorjwilli/fscSS: Calculates Summary Statistics from fsc26 simulations for ABC
calc_var_pi R Documentation
Function to calculate the sampling variance of pi (Nei 1987, eq. 10.7; from source code of DNAsp)
Description
Function to calculate the sampling variance of pi (Nei 1987, eq. 10.7; from source code of DNAsp)
Usage
calc_var_pi(x, nsites = NULL)
Arguments
x
An object of class DNAbin or a matrix where rows are sequences and columns are nucleotide positions (assumed to be already aligned)
nsites
Optional integer specifying the total number of nucleotide sites in the alignment if fastsimcoal2 does not output all sites
trevorjwilli/fscSS documentation built on Jan. 11, 2023, 7:45 a.m.
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| calc_var_pi | R Documentation |
Function to calculate the sampling variance of pi (Nei 1987, eq. 10.7; from source code of DNAsp)
Description
Function to calculate the sampling variance of pi (Nei 1987, eq. 10.7; from source code of DNAsp)
Usage
calc_var_pi(x, nsites = NULL)
Arguments
x |
An object of class DNAbin or a matrix where rows are sequences and columns are nucleotide positions (assumed to be already aligned) |
nsites |
Optional integer specifying the total number of nucleotide sites in the alignment if fastsimcoal2 does not output all sites |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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